RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 RNF39Q9H2S5 420 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 GBA2Q9HCG7 927 aaPredicted RBP16.48■□□□□ 0.23
VARS2-212ENST00000542001 SMPD4Q9NXE4 827 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 MFHAS1Q9Y4C4 1052 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 SNX13Q9Y5W8 968 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 NDUFS3O75489 264 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 OR4Q2P0C623 313 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 HSPA8P11142 646 aaKnown RBP16.48■□□□□ 0.23
VARS2-212ENST00000542001 MRPS22P82650 360 aaKnown RBP16.48■□□□□ 0.23
VARS2-212ENST00000542001 C12orf50Q8NA57 414 aaPredicted RBP16.48■□□□□ 0.23
VARS2-212ENST00000542001 SHCBP1Q8NEM2 672 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 CD101Q93033 1021 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 ULK4Q96C45 1275 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 SDCCAG3Q96C92 435 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 NIFKQ9BYG3 293 aaKnown RBP16.48■□□□□ 0.23
VARS2-212ENST00000542001 VCX3AQ9NNX9 186 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 WARS2Q9UGM6 360 aaKnown RBP16.48■□□□□ 0.23
VARS2-212ENST00000542001 BAG5Q9UL15 447 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 CACNA1SQ13698 1873 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 C4AP0C0L4 1744 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 C4BP0C0L5 1744 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 MSI1O43347 362 aaKnown RBP16.48■□□□□ 0.23
VARS2-212ENST00000542001 SMIM10L2AP0DMW4 78 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 SMIM10L2BP0DMW5 78 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 ITGB6P18564 788 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 FGFR3P22607 806 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 SERPINB8P50452 374 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 UGP2Q16851 508 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 MFSD14CQ5VZR4 134 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 OVOS1Q6IE37 1185 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 PIWIL2Q8TC59 973 aaKnown RBP16.48■□□□□ 0.23
VARS2-212ENST00000542001 TUBGCP3Q96CW5 907 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 NMD3Q96D46 503 aaKnown RBP16.48■□□□□ 0.23
VARS2-212ENST00000542001 GCNAQ96QF7 691 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 BATF3Q9NR55 127 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 LATS2Q9NRM7 1088 aa16.48■□□□□ 0.23
VARS2-212ENST00000542001 TYW5A2RUC4 315 aaKnown RBP16.47■□□□□ 0.23
VARS2-212ENST00000542001 ANGPT2O15123 496 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 E2F6O75461 281 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 SMNDC1O75940 238 aaKnown RBP eCLIP16.47■□□□□ 0.233e-7■■□□□ 11.4
VARS2-212ENST00000542001 ASMTLO95671 621 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 ABHD2P08910 425 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 HNRNPLP14866 589 aaKnown RBP eCLIP16.47■□□□□ 0.23
VARS2-212ENST00000542001 MBTD1Q05BQ5 628 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 IGDCC3Q8IVU1 814 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 WNT8BQ93098 351 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 APOL5Q9BWW9 433 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 FRMD8P1Q9BZ68 369 aaPredicted RBP16.47■□□□□ 0.23
VARS2-212ENST00000542001 SLC38A7Q9NVC3 462 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 SOX13Q9UN79 622 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 TJP1Q07157 1748 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 SLC12A8A0AV02 714 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 TRIM13O60858 407 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 RASSF9O75901 435 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 SERPINE1P05121 402 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 ZNF618Q5T7W0 954 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 SLC30A9Q6PML9 568 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 TSHZ1Q6ZSZ6 1077 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 ILDR2Q71H61 639 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 PLPPR4Q7Z2D5 763 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 SLC41A1Q8IVJ1 513 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 KCTD4Q8WVF5 259 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 EXOC2Q96KP1 924 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 SEMA6AQ9H2E6 1030 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 FAM96AQ9H5X1 160 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 RBPJLQ9UBG7 517 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 SMIM28A0A1B0GU29 152 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 CHADO15335 359 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 CSH1P0DML2 217 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 CSH2P0DML3 217 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 XPAP23025 273 aaPredicted RBP16.47■□□□□ 0.23
VARS2-212ENST00000542001 CACNA2D1P54289 1103 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 ZRANB3Q5FWF4 1079 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 LDB1Q86U70 411 aaPredicted RBP16.47■□□□□ 0.23
VARS2-212ENST00000542001 ANKRD52Q8NB46 1076 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 NMRAL1Q9HBL8 299 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 GGA2Q9UJY4 613 aa16.47■□□□□ 0.23
VARS2-212ENST00000542001 ITGA2BP08514 1039 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 NELFEP18615 380 aaKnown RBP16.46■□□□□ 0.23
VARS2-212ENST00000542001 GPD2P43304 727 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 CPT1AP50416 773 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 SCNN1BP51168 640 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 GPX6P59796 221 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 ESRRGP62508 458 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 SLC34A1Q06495 639 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 KHDC1Q4VXA5 237 aaKnown RBP16.46■□□□□ 0.23
VARS2-212ENST00000542001 SPDYAQ5MJ70 313 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 OTOP3Q7RTS5 596 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 CERS2Q96G23 380 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 CHRAC1Q9NRG0 131 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 DTNAQ9Y4J8 743 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 KIF1CO43896 1103 aaKnown RBP16.46■□□□□ 0.23
VARS2-212ENST00000542001 ALADP13716 330 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 NPR3P17342 541 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 CXCR3P49682 368 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 ANKS1BQ7Z6G8 1248 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 SPATA22Q8NHS9 363 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 MOCOSQ96EN8 888 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 POPDC2Q9HBU9 364 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 MYH1P12882 1939 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms