RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	PPM1F	P49593	454 aa	Predicted RBP	3.14	□□□□□ -1.91
CD44-238	ENST00000534296	SLC37A1	P57057	533 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	TAS2R50	P59544	299 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	ICA1	Q05084	483 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	GAB1	Q13480	694 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	GALNT3	Q14435	633 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	INPP5J	Q15735	1006 aa	Predicted RBP	3.14	□□□□□ -1.91
CD44-238	ENST00000534296	PRTG	Q2VWP7	1150 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	TBRG1	Q3YBR2	411 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	TTC39A	Q5SRH9	613 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	C6orf10	Q5SRN2	563 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	C10orf76	Q5T2E6	689 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	C10orf62	Q5T681	223 aa	Predicted RBP	3.14	□□□□□ -1.91
CD44-238	ENST00000534296	ANO1	Q5XXA6	986 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	C16orf89	Q6UX73	402 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	RFX8	Q6ZV50	586 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	IRF2BP2	Q7Z5L9	587 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	DDIAS	Q8IXT1	998 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	EXOC8	Q8IYI6	725 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	SPICE1	Q8N0Z3	855 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	OR52N4	Q8NGI2	321 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	LPAR1	Q92633	364 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	VCPIP1	Q96JH7	1222 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	SCLT1	Q96NL6	688 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	WAC	Q9BTA9	647 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	CHMP4A	Q9BY43	222 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	TP63	Q9H3D4	680 aa	Predicted RBP	3.14	□□□□□ -1.91
CD44-238	ENST00000534296	EBF3	Q9H4W6	596 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	FZD3	Q9NPG1	666 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	FSCN3	Q9NQT6	498 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	LIN7C	Q9NUP9	197 aa	Known RBP	3.14	□□□□□ -1.91
CD44-238	ENST00000534296	TAGLN3	Q9UI15	199 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	B3GNT3	Q9Y2A9	372 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	SETD1B	Q9UPS6	1966 aa	Known RBP	3.14	□□□□□ -1.91
CD44-238	ENST00000534296	TTBK1	Q5TCY1	1321 aa	Predicted RBP	3.14	□□□□□ -1.91
CD44-238	ENST00000534296	KIR2DS5	A0A0G2JLQ3	304 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	MBD3L5	A6NJ08	208 aa	Predicted RBP	3.13	□□□□□ -1.91
CD44-238	ENST00000534296	CD8B2	A6NJW9	211 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	KIR2DS3	K7RE56	304 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	MSI1	O43347	362 aa	Known RBP	3.13	□□□□□ -1.91
CD44-238	ENST00000534296	ASNA1	O43681	348 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	TLX3	O43711	291 aa	Predicted RBP	3.13	□□□□□ -1.91
CD44-238	ENST00000534296	RPP40	O75818	363 aa	Known RBP	3.13	□□□□□ -1.91
CD44-238	ENST00000534296	LCK	P06239	509 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	OAZ1	P54368	228 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	RBM6	P78332	1123 aa	Known RBP	3.13	□□□□□ -1.91
CD44-238	ENST00000534296	GAD2	Q05329	585 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	SF3A3	Q12874	501 aa	Known RBP eCLIP	3.13	□□□□□ -1.91
CD44-238	ENST00000534296	TRIM14	Q14142	442 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	GRM4	Q14833	912 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	RPS6KA2	Q15349	733 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	GPR162	Q16538	588 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	MIDN	Q504T8	468 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	ALG10	Q5BKT4	473 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	ALG10B	Q5I7T1	473 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	XRRA1	Q6P2D8	792 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	GGT6	Q6P531	493 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	ZNF474	Q6S9Z5	364 aa	Predicted RBP	3.13	□□□□□ -1.91
CD44-238	ENST00000534296	KLHL17	Q6TDP4	642 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	TOGARAM2	Q6ZUX3	1019 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	RAB11FIP2	Q7L804	512 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	IGFN1	Q86VF2	1251 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	TMEM199	Q8N511	208 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	C9orf106	Q8NAJ2	232 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	ZNF548	Q8NEK5	533 aa	Predicted RBP	3.13	□□□□□ -1.91
CD44-238	ENST00000534296	FAM71B	Q8TC56	605 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	HMGB4	Q8WW32	186 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	CPT1B	Q92523	772 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	SLC25A28	Q96A46	364 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	ARPC5L	Q9BPX5	153 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	WDR83	Q9BRX9	315 aa	Known RBP	3.13	□□□□□ -1.91
CD44-238	ENST00000534296	BRD8	Q9H0E9	1235 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	THSD1	Q9NS62	852 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	MSRB1	Q9NZV6	116 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	TRPC5	Q9UL62	973 aa	Predicted RBP	3.13	□□□□□ -1.91
CD44-238	ENST00000534296	COG5	Q9UP83	839 aa		3.13	□□□□□ -1.91
CD44-238	ENST00000534296	TRBV5-3	A0A0A0MS03	114 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	ABHD14A-ACY1	A0A1B0GW23	586 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	FAM90A8P	A6NJQ4	464 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	KIF28P	B7ZC32	967 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	DHH	O43323	396 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	KCNAB3	O43448	404 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	DNPH1	O43598	174 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	ALDOC	P09972	364 aa	Known RBP	3.12	□□□□□ -1.91
CD44-238	ENST00000534296	RFPL3S	P0C7P2	107 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	FAM90A13P	P0C7W8	464 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	FAM90A24P	P0C7X0	464 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	HOXB6	P17509	224 aa	Known RBP	3.12	□□□□□ -1.91
CD44-238	ENST00000534296	KLRK1	P26718	216 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	TKT	P29401	623 aa	Known RBP	3.12	□□□□□ -1.91
CD44-238	ENST00000534296	CHRNA5	P30532	468 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	FOXG1	P55316	489 aa	Predicted RBP	3.12	□□□□□ -1.91
CD44-238	ENST00000534296	BLMH	Q13867	455 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	RAPGEF1	Q13905	1077 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	PTK2B	Q14289	1009 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	SPARCL1	Q14515	664 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	PTGR1	Q14914	329 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	HSP90AB4P	Q58FF6	505 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	NFRKB	Q6P4R8	1299 aa		3.12	□□□□□ -1.91
CD44-238	ENST00000534296	PDXDC1	Q6P996	788 aa		3.12	□□□□□ -1.91

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