RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 MRGPRX3Q96LB0 322 aa16.35■□□□□ 0.21
CPSF1-205ENST00000531042 BTBD1Q9H0C5 482 aa16.35■□□□□ 0.21
CPSF1-205ENST00000531042 MTG2Q9H4K7 406 aa16.35■□□□□ 0.21
CPSF1-205ENST00000531042 THAP9Q9H5L6 903 aa16.35■□□□□ 0.21
CPSF1-205ENST00000531042 XPO7Q9UIA9 1087 aaKnown RBP16.35■□□□□ 0.21
CPSF1-205ENST00000531042 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-205ENST00000531042 NEUROG3Q9Y4Z2 214 aa16.35■□□□□ 0.21
CPSF1-205ENST00000531042 WDFY3Q8IZQ1 3526 aa16.35■□□□□ 0.21
CPSF1-205ENST00000531042 H0Y626 953 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 TRIM16O95361 564 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 SEMA4FO95754 770 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 TRUB2O95900 331 aaKnown RBP16.34■□□□□ 0.21
CPSF1-205ENST00000531042 APOEP02649 317 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 RDXP35241 583 aaKnown RBP16.34■□□□□ 0.21
CPSF1-205ENST00000531042 UBE2HP62256 183 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 APBA1Q02410 837 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 PDCLQ13371 301 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 EIF4EBP2Q13542 120 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-205ENST00000531042 CDH18Q13634 790 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 ARHGAP44Q17R89 818 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 ZNF423Q2M1K9 1284 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 HNRNPA1L2Q32P51 320 aaKnown RBP16.34■□□□□ 0.21
CPSF1-205ENST00000531042 TTC31Q49AM3 519 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-205ENST00000531042 PITRM1Q5JRX3 1037 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 RAP1GAP2Q684P5 730 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 ZNF776Q68DI1 518 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-205ENST00000531042 IL27RAQ6UWB1 636 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 GBP6Q6ZN66 633 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 MMS22LQ6ZRQ5 1243 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 IRF2BP1Q8IU81 584 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 CCDC117Q8IWD4 279 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-205ENST00000531042 LGI2Q8N0V4 545 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 WDTC1Q8N5D0 677 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 KDM1BQ8NB78 822 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 SNX19Q92543 992 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 BTN2A3PQ96KV6 586 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 RSPH9Q9H1X1 276 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-205ENST00000531042 GAREM1Q9H706 876 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 IL21RQ9HBE5 538 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 APEX2Q9UBZ4 518 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 TJP2Q9UDY2 1190 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 KLK13Q9UKR3 277 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 ERVW-1Q9UQF0 538 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 PCDHB9Q9Y5E1 797 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 SLCO1B1Q9Y6L6 691 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 CHD6Q8TD26 2715 aa16.34■□□□□ 0.21
CPSF1-205ENST00000531042 GTPBP10A4D1E9 387 aaKnown RBP16.33■□□□□ 0.2
CPSF1-205ENST00000531042 TMEM8BA6NDV4 472 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 SIN3BO75182 1162 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 CER1O95813 267 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 ZNF883P0CG24 379 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 TACR2P21452 398 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 USP8P40818 1118 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 MATKP42679 507 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 CSNK1EP49674 416 aaKnown RBP16.33■□□□□ 0.2
CPSF1-205ENST00000531042 AFF3P51826 1226 aaKnown RBP16.33■□□□□ 0.2
CPSF1-205ENST00000531042 PITX1P78337 314 aaPredicted RBP16.33■□□□□ 0.2
CPSF1-205ENST00000531042 ARID5BQ14865 1188 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 TAF5Q15542 800 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 EXOC3L4Q17RC7 722 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 HLA-BQ31612 363 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 CHSY1Q86X52 802 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 SHC3Q92529 594 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 BIRC7Q96CA5 298 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 SGK2Q9HBY8 427 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 OSGEPQ9NPF4 335 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.33■□□□□ 0.2
CPSF1-205ENST00000531042 KIAA1522Q9P206 1035 aaPredicted RBP16.33■□□□□ 0.2
CPSF1-205ENST00000531042 ZMIZ1Q9ULJ6 1067 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 SCML1Q9UN30 329 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 MSRB2Q9Y3D2 182 aa16.33■□□□□ 0.2
CPSF1-205ENST00000531042 A0A1B0GVT2 93 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 FAM221BA6H8Z2 402 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 MOCS3O95396 460 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 GLI1P08151 1106 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 SRPRAP08240 638 aaKnown RBP16.32■□□□□ 0.2
CPSF1-205ENST00000531042 PON1P27169 355 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 CTSOP43234 321 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-205ENST00000531042 C9orf64Q5T6V5 341 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 USP30Q70CQ3 517 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 RAB44Q7Z6P3 723 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-205ENST00000531042 DHX40Q8IX18 779 aaKnown RBP16.32■□□□□ 0.2
CPSF1-205ENST00000531042 CHCHD4Q8N4Q1 142 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 ATP6V0D2Q8N8Y2 350 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 PPP1R13BQ96KQ4 1090 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 CPXM1Q96SM3 734 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 PRMT1Q99873 361 aaKnown RBP16.32■□□□□ 0.2
CPSF1-205ENST00000531042 PABPC3Q9H361 631 aaKnown RBP16.32■□□□□ 0.2
CPSF1-205ENST00000531042 TM9SF3Q9HD45 589 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 TM7SF3Q9NS93 570 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 PCOLCE2Q9UKZ9 415 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 PCDHGC3Q9UN70 934 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 NCKAP1Q9Y2A7 1128 aa16.32■□□□□ 0.2
CPSF1-205ENST00000531042 FNDC3AQ9Y2H6 1198 aaKnown RBP16.32■□□□□ 0.2
CPSF1-205ENST00000531042 IGF2RP11717 2491 aa16.31■□□□□ 0.2
CPSF1-205ENST00000531042 SPEGQ15772 3267 aa16.31■□□□□ 0.2
CPSF1-205ENST00000531042 ITIH6Q6UXX5 1313 aa16.31■□□□□ 0.2
CPSF1-205ENST00000531042 TARSL2A2RTX5 802 aaKnown RBP16.31■□□□□ 0.2
CPSF1-205ENST00000531042 TTC34A8MYJ7 566 aa16.31■□□□□ 0.2
CPSF1-205ENST00000531042 KCNU1A8MYU2 1149 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms