RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 HERC6Q8IVU3 1022 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 KYQ8NBH2 561 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 EPS8L1Q8TE68 723 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 VPS33AQ96AX1 596 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 PSKH2Q96QS6 385 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 NACC1Q96RE7 527 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 MIR1-1HGQ9H1L0 117 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 PARVAQ9NVD7 372 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 HOXC10Q9NYD6 342 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 LIASO43766 372 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 SLC1A6P48664 564 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 SEPHS1P49903 392 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 TAS2R40P59535 323 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 CTAG1AP78358 180 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 FASTKD1Q53R41 847 aaKnown RBP12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 TRAF7Q6Q0C0 670 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 CYP2R1Q6VVX0 501 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 GALNT7Q86SF2 657 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 PSD4Q8NDX1 1056 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 FNIP1Q8TF40 1166 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 PEX13Q92968 403 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 ACSF2Q96CM8 615 aaPredicted RBP12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 CFAP36Q96G28 342 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 PIGSQ96S52 555 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 TMEM246Q9BRR3 403 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 ATP13A3Q9H7F0 1226 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 ARMC1Q9NVT9 282 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 ABI2Q9NYB9 513 aaPredicted RBP12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 PSME2Q9UL46 239 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 AP4E1Q9UPM8 1137 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 DNM3Q9UQ16 869 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 RWDD3Q9Y3V2 267 aa12.33□□□□□ -0.44
LIMCH1-213ENST00000511496 TCRBV9S1A1TA0A576 114 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 SLC16A3O15427 465 aaKnown RBP12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 SLITRK3O94933 977 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 BPGMP07738 259 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 PTPN9P43378 593 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 CABP4P57796 275 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 VAC14Q08AM6 782 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 SLC51BQ86UW2 128 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 IGDCC3Q8IVU1 814 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 PDIK1LQ8N165 341 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 CCDC24Q8N4L8 307 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 ACMSDQ8TDX5 336 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 WDR83Q9BRX9 315 aaKnown RBP12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 RTKNQ9BST9 563 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 ANKRD60Q9BZ19 345 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 PCDHAC1Q9H158 963 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 ABCB10Q9NRK6 738 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 PKD2L2Q9NZM6 624 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 TCRBV7S3A2A0A539 114 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 hCG_2039718K7EN88 272 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 DAB1O75553 588 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 KRT6AP02538 564 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 KRT6BP04259 564 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 ATICP31939 592 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 ELK3P41970 407 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 DYNLT1P63172 113 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 GALK2Q01415 458 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 PRKCQQ04759 706 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 DALRD3Q5D0E6 543 aaKnown RBP12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 MROH9Q5TGP6 573 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 SH2D5Q6ZV89 423 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 MAVSQ7Z434 540 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 ARMC8Q8IUR7 673 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 CCDC60Q8IWA6 550 aaPredicted RBP12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 RCN3Q96D15 328 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 RMDN1Q96DB5 314 aa12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 SAE1Q9UBE0 346 aaPredicted RBP12.32□□□□□ -0.44
LIMCH1-213ENST00000511496 ZBTB39O15060 712 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 DYRK3O43781 588 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 SNNO75324 88 aaPredicted RBP12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 KRT37O76014 449 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 ATP5BP06576 529 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 GZMAP12544 262 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 GCLMP48507 274 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 SLC26A2P50443 739 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 ART3Q13508 389 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 TUBA3CQ13748 450 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 GRM4Q14833 912 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 TAF5Q15542 800 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 SDE2Q6IQ49 451 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 USP17L2Q6R6M4 530 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 C16orf89Q6UX73 402 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 GLRX5Q86SX6 157 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 CCDC103Q8IW40 242 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 TTC30BQ8N4P2 665 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 PSMA8Q8TAA3 256 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 NPLOC4Q8TAT6 608 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 TMEM206Q9H813 350 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 ITM2CQ9NQX7 267 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 SMOXQ9NWM0 555 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 SHOC2Q9UQ13 582 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 POLHQ9Y253 713 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 KBTBD13C9JR72 458 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 SOCS2O14508 198 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 NEMP1O14524 444 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 PHGDHO43175 533 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 TGFB1I1O43294 461 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms