RNA–Protein interactions for RNA: ENST00000509388.5

RNF4-213, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-213ENST00000509388 CA14Q9ULX7 337 aa15.3■□□□□ 0.04
RNF4-213ENST00000509388 CAPN6Q9Y6Q1 641 aa15.3■□□□□ 0.04
RNF4-213ENST00000509388 TCF20Q9UGU0 1960 aaKnown RBP15.29■□□□□ 0.04
RNF4-213ENST00000509388 PRUNE2Q8WUY3 3088 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 A0A1B0GVM2 712 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 CCDC66A2RUB6 948 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 LRRD1A4D1F6 860 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 TCAF2A6NFQ2 919 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 DRGXA6NNA5 263 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 FAM72CH0Y354 149 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 DCXO43602 365 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 FTCDO95954 541 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 KRT1P04264 644 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 ALADP13716 330 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 SGSHP51688 502 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 CDH4P55283 916 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 ZXDAP98168 799 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 PRKCQQ04759 706 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 ATP13A4Q4VNC1 1196 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 FAM72AQ5TYM5 149 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 FAM72DQ6L9T8 149 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 TPRG1Q6ZUI0 275 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 FAM72BQ86X60 149 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 UBL4BQ8N7F7 174 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 KCTD15Q96SI1 283 aaPredicted RBP15.29■□□□□ 0.04
RNF4-213ENST00000509388 CALN1Q9BXU9 219 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 MAK16Q9BXY0 300 aaKnown RBP15.29■□□□□ 0.04
RNF4-213ENST00000509388 SLC2A11Q9BYW1 496 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 ARHGEF3Q9NR81 526 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 DNAJC17Q9NVM6 304 aaKnown RBP15.29■□□□□ 0.04
RNF4-213ENST00000509388 KLHL11Q9NVR0 708 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 MPP6Q9NZW5 540 aa15.29■□□□□ 0.04
RNF4-213ENST00000509388 IGLV3-10A0A075B6K4 115 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 MIF4GDA9UHW6 222 aaKnown RBP15.28■□□□□ 0.04
RNF4-213ENST00000509388 GFRA2O00451 464 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 STK25O00506 426 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 FGF10O15520 208 aaPredicted RBP15.28■□□□□ 0.04
RNF4-213ENST00000509388 CACNG3O60359 315 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 TULP3O75386 442 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 LUC7L3O95232 432 aaKnown RBP15.28■□□□□ 0.04
RNF4-213ENST00000509388 RHOQP17081 205 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 HOXD9P28356 352 aaPredicted RBP15.28■□□□□ 0.04
RNF4-213ENST00000509388 OR1E1P30953 314 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 CTHP32929 405 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 CETN2P41208 172 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 DGKGP49619 791 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 OXCT1P55809 520 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 RWDD2BP57060 319 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 C5orf22Q49AR2 442 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 C6orf118Q5T5N4 469 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 GRAMD4Q6IC98 578 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 ZNF852Q6ZMS4 543 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 CYP4V2Q6ZWL3 525 aaPredicted RBP15.28■□□□□ 0.04
RNF4-213ENST00000509388 CHST9Q7L1S5 443 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 NT5DC3Q86UY8 548 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 CIR1Q86X95 450 aaPredicted RBP15.28■□□□□ 0.04
RNF4-213ENST00000509388 CCDC50Q8IVM0 306 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 FAM3CQ92520 227 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 CD101Q93033 1021 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 MYEOVQ96EZ4 313 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 PNKPQ96T60 521 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 P2RY13Q9BPV8 354 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 RETREG1Q9H6L5 497 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 PCDH18Q9HCL0 1135 aa15.28■□□□□ 0.04
RNF4-213ENST00000509388 MRPS17Q9Y2R5 130 aaKnown RBP15.28■□□□□ 0.04
RNF4-213ENST00000509388 HELZP42694 1942 aaKnown RBP15.27■□□□□ 0.04
RNF4-213ENST00000509388 COL6A3P12111 3177 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 PI4K2BG5E9Z4 385 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 CNTN5O94779 1100 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 ZRANB2O95218 330 aaKnown RBP eCLIP15.27■□□□□ 0.04
RNF4-213ENST00000509388 GOT1P17174 413 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 KDELR1P24390 212 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 CTNNA2P26232 953 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 CTNNA1P35221 906 aaKnown RBP15.27■□□□□ 0.04
RNF4-213ENST00000509388 EIF2DP41214 584 aaKnown RBP15.27■□□□□ 0.04
RNF4-213ENST00000509388 SLC6A11P48066 632 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 HCAR3P49019 387 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 DNA2P51530 1060 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 GALK1P51570 392 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 GRSF1Q12849 480 aaKnown RBP eCLIP15.27■□□□□ 0.04
RNF4-213ENST00000509388 RPS6KA1Q15418 735 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 ALFQ53S48 1182 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 ZNF569Q5MCW4 686 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 RFX8Q6ZV50 586 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 TFAP2DQ7Z6R9 452 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 SUGP1Q8IWZ8 645 aaKnown RBP15.27■□□□□ 0.04
RNF4-213ENST00000509388 ZNF683Q8IZ20 524 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 RCOR2Q8IZ40 523 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 SIX5Q8N196 739 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 FIBINQ8TAL6 211 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.27■□□□□ 0.04
RNF4-213ENST00000509388 EDAQ92838 391 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 RNF25Q96BH1 459 aaPredicted RBP15.27■□□□□ 0.04
RNF4-213ENST00000509388 RBM41Q96IZ5 413 aaKnown RBP15.27■□□□□ 0.04
RNF4-213ENST00000509388 ARHGEF4Q9NR80 690 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 CWC15Q9P013 229 aaKnown RBP15.27■□□□□ 0.04
RNF4-213ENST00000509388 KIAA1522Q9P206 1035 aaPredicted RBP15.27■□□□□ 0.04
RNF4-213ENST00000509388 RCOR3Q9P2K3 495 aaPredicted RBP15.27■□□□□ 0.04
RNF4-213ENST00000509388 PCDHA3Q9Y5H8 950 aa15.27■□□□□ 0.04
RNF4-213ENST00000509388 TBC1D3BA6NDS4 549 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms