RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ATXN1LP0C7T5 689 aaKnown RBP21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 NUDT1P36639 197 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 FMO5P49326 533 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 SLC12A1Q13621 1099 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 ARID5BQ14865 1188 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 CST6Q15828 149 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 PTPRNQ16849 979 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 CCDC157Q569K6 752 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 RFWD3Q6PCD5 774 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 SND1Q7KZF4 910 aaKnown RBP eCLIP21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 BHLHA9Q7RTU4 235 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 PDZD3Q86UT5 571 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 TMPRSS12Q86WS5 348 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 OR2T34Q8NGX1 318 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 SLC35F5Q8WV83 523 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 TTC17Q96AE7 1141 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 P2RY11Q96G91 374 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 GDF3Q9NR23 364 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 ST7Q9NRC1 585 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 PCDHGA1Q9Y5H4 931 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 ZFHX4Q86UP3 3567 aa21.81■■□□□ 1.08
SQSTM1-210ENST00000506042 A0A1W2PPC4 97 aa21.8■■□□□ 1.08
SQSTM1-210ENST00000506042 BICDL2A1A5D9 508 aa21.8■■□□□ 1.08
SQSTM1-210ENST00000506042 PMM2O15305 246 aa21.8■■□□□ 1.08
SQSTM1-210ENST00000506042 RNASEH2AO75792 299 aaKnown RBP21.8■■□□□ 1.08
SQSTM1-210ENST00000506042 CD70P32970 193 aa21.8■■□□□ 1.08
SQSTM1-210ENST00000506042 CTSKP43235 329 aa21.8■■□□□ 1.08
SQSTM1-210ENST00000506042 RGS7P49802 495 aa21.8■■□□□ 1.08
SQSTM1-210ENST00000506042 SULT2A1Q06520 285 aa21.8■■□□□ 1.08
SQSTM1-210ENST00000506042 PNOCQ13519 176 aa21.8■■□□□ 1.08
SQSTM1-210ENST00000506042 C6orf118Q5T5N4 469 aa21.8■■□□□ 1.08
SQSTM1-210ENST00000506042 MDM1Q8TC05 714 aa21.8■■□□□ 1.08
SQSTM1-210ENST00000506042 SLC35C1Q96A29 364 aa21.8■■□□□ 1.08
SQSTM1-210ENST00000506042 NXPE2Q96DL1 559 aa21.8■■□□□ 1.08
SQSTM1-210ENST00000506042 DHTKD1Q96HY7 919 aaPredicted RBP21.8■■□□□ 1.08
SQSTM1-210ENST00000506042 ADAMTS20P59510 1910 aa21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 SLC2A3P11169 496 aa21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 CSKP41240 450 aa21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 BNC1Q01954 994 aa21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 HS1BP3Q53T59 392 aa21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 TTC39BQ5VTQ0 682 aaPredicted RBP21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 ANKRD40Q6AI12 368 aa21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 C19orf48Q6RUI8 117 aa21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 ZC3H3Q8IXZ2 948 aaKnown RBP21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 FAM81BQ96LP2 452 aa21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 MED15Q96RN5 788 aa21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 ELF4Q99607 663 aaPredicted RBP21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 MIS12Q9H081 205 aa21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 ADAMTS1Q9UHI8 967 aa21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 MUC22E2RYF6 1773 aaPredicted RBP21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 CACNA1GO43497 2377 aa21.79■■□□□ 1.08
SQSTM1-210ENST00000506042 A0A1B0GTQ1 180 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 H0Y8X5 98 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 DKK1O94907 266 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 LUC7L3O95232 432 aaKnown RBP21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 GNA14O95837 355 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 CAPNS1P04632 268 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 C5AR1P21730 350 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 CD38P28907 300 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 CCR5P51681 352 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 SNX16P57768 344 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 ECT2LQ008S8 904 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 GCNT1Q02742 428 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 CCDC15Q0P6D6 951 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 COL28A1Q2UY09 1125 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 PKDCCQ504Y2 493 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 FAM133BQ5BKY9 247 aaKnown RBP21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 PMF1Q6P1K2 205 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 BEND5Q7L4P6 421 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 DHX40Q8IX18 779 aaKnown RBP21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 SCUBE3Q8IX30 993 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 ATP6V0D2Q8N8Y2 350 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 BTN2A3PQ96KV6 586 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 GOLPH3LQ9H4A5 285 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 ERVW-1Q9UQF0 538 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 PTPRBP23467 1997 aa21.78■■□□□ 1.08
SQSTM1-210ENST00000506042 F5H5T6 163 aa21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 SIN3BO75182 1162 aa21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 LDOC1O95751 146 aaPredicted RBP21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 SLC8A1P32418 973 aa21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 GALCP54803 685 aa21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 ELAVL3Q14576 367 aaKnown RBP21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 SMAD1Q15797 465 aaKnown RBP21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 MEA1Q16626 185 aa21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 MS4A13Q5J8X5 152 aa21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 PITRM1Q5JRX3 1037 aa21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 RABGAP1LQ5R372 815 aa21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 FAM46CQ5VWP2 391 aa21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 LRRC69Q6ZNQ3 347 aa21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 CHSY1Q86X52 802 aa21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 RNF34Q969K3 372 aa21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 RAXQ9Y2V3 346 aa21.77■■□□□ 1.08
SQSTM1-210ENST00000506042 A0A1W2PP55 124 aa21.76■■□□□ 1.07
SQSTM1-210ENST00000506042 TRABD2BA6NFA1 517 aa21.76■■□□□ 1.07
SQSTM1-210ENST00000506042 ENC1O14682 589 aa21.76■■□□□ 1.07
SQSTM1-210ENST00000506042 FGFR1OPO95684 399 aaKnown RBP21.76■■□□□ 1.07
SQSTM1-210ENST00000506042 MOCS2O96007 188 aaPredicted RBP21.76■■□□□ 1.07
SQSTM1-210ENST00000506042 JUPP14923 745 aa21.76■■□□□ 1.07
SQSTM1-210ENST00000506042 GOT1P17174 413 aa21.76■■□□□ 1.07
SQSTM1-210ENST00000506042 SLC6A4P31645 630 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms