RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 ADPGKQ9BRR6 497 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 ZNF670Q9BS34 389 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 DBNDD1Q9H9R9 158 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 TMEM216Q9P0N5 145 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 EPS15L1Q9UBC2 864 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 TUBGCP4Q9UGJ1 667 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 MID2Q9UJV3 735 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 PTBP2Q9UKA9 531 aaKnown RBP9.92□□□□□ -0.82
SYNE1-230ENST00000495090 RNF11Q9Y3C5 154 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 SSC5DA1L4H1 1573 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 ARHGEF37A1IGU5 675 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 TESPA1A2RU30 521 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-230ENST00000495090 C2CD4BA6NLJ0 364 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 SLCO1B7G3V0H7 640 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 DPYSL4O14531 572 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 MAGEB3O15480 346 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 CLASP2O75122 1294 aaKnown RBP9.92□□□□□ -0.82
SYNE1-230ENST00000495090 HSPA4LO95757 839 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 KCNA2P16389 499 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 PGAM1P18669 254 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 CCND2P30279 289 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 HSPA1LP34931 641 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 PPARGP37231 505 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-230ENST00000495090 PRKAA2P54646 552 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 CEACAM7Q14002 265 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 PPP2R5DQ14738 602 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 ZYXQ15942 572 aaKnown RBP9.92□□□□□ -0.82
SYNE1-230ENST00000495090 ZNF699Q32M78 642 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 MGAT5BQ3V5L5 792 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 KCTD21Q4G0X4 260 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 SWSAP1Q6NVH7 229 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 RSBN1LQ6PCB5 846 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-230ENST00000495090 PAOXQ6QHF9 649 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 ANKRD23Q86SG2 305 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 HACE1Q8IYU2 909 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 ZNF781Q8N8C0 355 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 JDP2Q8WYK2 163 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 BCO2Q9BYV7 579 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 ANKRD60Q9BZ19 345 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 MTMR12Q9C0I1 747 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 XYLT2Q9H1B5 865 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 SLC38A10Q9HBR0 1119 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 EIF2B3Q9NR50 452 aaKnown RBP9.92□□□□□ -0.82
SYNE1-230ENST00000495090 MRGBPQ9NV56 204 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 IPO11Q9UI26 975 aaKnown RBP9.92□□□□□ -0.82
SYNE1-230ENST00000495090 SLC8A2Q9UPR5 921 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 MATN2O00339 956 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 MDM4O15151 490 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 HDAC3O15379 428 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 TRPA1O75762 1119 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 METTL18O95568 372 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 HMGCRP04035 888 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 CD19P15391 556 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 ZNF12P17014 697 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 GP5P40197 560 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 NR2C2P49116 596 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 PSMD7P51665 324 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 MS4A2Q01362 244 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 IKBKEQ14164 716 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 STILQ15468 1287 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 GRTP1Q5TC63 336 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 ARHGEF16Q5VV41 709 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 ABHD15Q6UXT9 468 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 VSIG10LQ86VR7 867 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 CCDC60Q8IWA6 550 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-230ENST00000495090 TERB1Q8NA31 727 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 TDRD5Q8NAT2 981 aaKnown RBP9.91□□□□□ -0.82
SYNE1-230ENST00000495090 RIN3Q8TB24 985 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 SNRNP27Q8WVK2 155 aaKnown RBP9.91□□□□□ -0.82
SYNE1-230ENST00000495090 EME1Q96AY2 570 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 ITPKCQ96DU7 683 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 ASB9Q96DX5 294 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 RMND5BQ96G75 393 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-230ENST00000495090 KLHL32Q96NJ5 620 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 UHRF1Q96T88 793 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-230ENST00000495090 CPNE1Q99829 537 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 ILKAPQ9H0C8 392 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-230ENST00000495090 WDR41Q9HAD4 459 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 EFCAB1Q9HAE3 211 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 CLK4Q9HAZ1 481 aaKnown RBP9.91□□□□□ -0.82
SYNE1-230ENST00000495090 TBC1D23Q9NUY8 699 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 MTMR10Q9NXD2 777 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 ARHGEF38Q9NXL2 777 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 UTP6Q9NYH9 597 aaKnown RBP9.91□□□□□ -0.82
SYNE1-230ENST00000495090 SUCOQ9UBS9 1254 aaKnown RBP9.91□□□□□ -0.82
SYNE1-230ENST00000495090 BARX2Q9UMQ3 279 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-230ENST00000495090 SCN9AQ15858 1988 aa9.91□□□□□ -0.82
SYNE1-230ENST00000495090 DOCK5Q9H7D0 1870 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 GOLGA8QA0A0J9YX86 632 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 MYOCOSA0A1B0GUC4 107 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 GOLGA8OA6NCC3 632 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 LRRIQ4A6NIV6 560 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 GOLGA8NF8WBI6 632 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 TRIM38O00635 465 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 TRIM13O60858 407 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 RNASEH2AO75792 299 aaKnown RBP9.9□□□□□ -0.82
SYNE1-230ENST00000495090 APOA4P06727 396 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 ADORA2AP29274 412 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 TYK2P29597 1187 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 HMOX2P30519 316 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms