RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 CFAP52Q8N1V2 620 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 BAHD1Q8TBE0 780 aaPredicted RBP13.13□□□□□ -0.31
SKA1-205ENST00000494518 SLC35F5Q8WV83 523 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 SMARCE1Q969G3 411 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 NUCKS1Q9H1E3 243 aaKnown RBP13.13□□□□□ -0.31
SKA1-205ENST00000494518 CCDC86Q9H6F5 360 aaKnown RBP13.13□□□□□ -0.31
SKA1-205ENST00000494518 SERGEFQ9UGK8 458 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 MYLKQ15746 1914 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 BPTFQ12830 3046 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 TDRD6O60522 2096 aaKnown RBP13.12□□□□□ -0.31
SKA1-205ENST00000494518 ARID1BQ8NFD5 2236 aaPredicted RBP13.12□□□□□ -0.31
SKA1-205ENST00000494518 FAM149AA5PLN7 773 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 GOLGA6L4A6NEF3 574 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 H0Y8X5 98 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 FLRT2O43155 660 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 SMC2O95347 1197 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 PAEPP09466 180 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 CTSOP43234 321 aaPredicted RBP13.12□□□□□ -0.31
SKA1-205ENST00000494518 LRRC63Q05C16 580 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 FSCBQ5H9T9 825 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 PRAMEF14Q5SWL7 426 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 NUGGCQ68CJ6 796 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 GLRX5Q86SX6 157 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 UNC45BQ8IWX7 931 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 HJURPQ8NCD3 748 aaPredicted RBP13.12□□□□□ -0.31
SKA1-205ENST00000494518 DQX1Q8TE96 717 aaKnown RBP13.12□□□□□ -0.31
SKA1-205ENST00000494518 GOLGA1Q92805 767 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 MYO19Q96H55 970 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 FCRL2Q96LA5 508 aaPredicted RBP13.12□□□□□ -0.31
SKA1-205ENST00000494518 SLC6A18Q96N87 628 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 GSDMAQ96QA5 445 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 PCED1AQ9H1Q7 454 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 ST7Q9NRC1 585 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 FBXL12Q9NXK8 326 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 XPO7Q9UIA9 1087 aaKnown RBP13.12□□□□□ -0.31
SKA1-205ENST00000494518 INTS6Q9UL03 887 aaKnown RBP13.12□□□□□ -0.31
SKA1-205ENST00000494518 KIAA1257Q9ULG3 409 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 NAALADL1Q9UQQ1 740 aa13.12□□□□□ -0.31
SKA1-205ENST00000494518 A0A1W2PP55 124 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 TTC34A8MYJ7 566 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 MID1O15344 667 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 FYNP06241 537 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 IGHV4-34P06331 123 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 CD27P26842 260 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 GRIA4P48058 902 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 ST8SIA6P61647 398 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 CDH18Q13634 790 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 CNGA2Q16280 664 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 COL28A1Q2UY09 1125 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 COBLL1Q53SF7 1204 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 KIAA0895LQ68EN5 471 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 TAC4Q86UU9 113 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 MMAAQ8IVH4 418 aaKnown RBP13.11□□□□□ -0.31
SKA1-205ENST00000494518 SCUBE3Q8IX30 993 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 SCML4Q8N228 414 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 IRGQQ8WZA9 623 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 FAM149B1Q96BN6 582 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 LMLNQ96KR4 655 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 MRGPRX3Q96LB0 322 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 ORAI3Q9BRQ5 295 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 PABPC3Q9H361 631 aaKnown RBP13.11□□□□□ -0.31
SKA1-205ENST00000494518 SGK2Q9HBY8 427 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 SUN2Q9UH99 717 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 RAXQ9Y2V3 346 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 GPSM3Q9Y4H4 160 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 CEP83Q9Y592 693 aa13.11□□□□□ -0.31
SKA1-205ENST00000494518 TYW5A2RUC4 315 aaKnown RBP13.1□□□□□ -0.31
SKA1-205ENST00000494518 PSMA7O14818 248 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 RNASEH2AO75792 299 aaKnown RBP13.1□□□□□ -0.31
SKA1-205ENST00000494518 KRT5P13647 590 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 CTSKP43235 329 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 PSMD8P48556 350 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 CCT8P50990 548 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 CLDN6P56747 220 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 ZBTB16Q05516 673 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 SUZ12Q15022 739 aaKnown RBP13.1□□□□□ -0.31
SKA1-205ENST00000494518 DCAF6Q58WW2 860 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 MS4A13Q5J8X5 152 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 PITRM1Q5JRX3 1037 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 RAP1GAP2Q684P5 730 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 DENND1BQ6P3S1 775 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 NCEH1Q6PIU2 408 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 CIR1Q86X95 450 aaPredicted RBP13.1□□□□□ -0.31
SKA1-205ENST00000494518 GATAD2AQ86YP4 633 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 LGI2Q8N0V4 545 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 ENGASEQ8NFI3 743 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 FIBINQ8TAL6 211 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 HNRNPLLQ8WVV9 542 aaKnown RBP13.1□□□□□ -0.31
SKA1-205ENST00000494518 TTC17Q96AE7 1141 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 KREMEN1Q96MU8 473 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 CDC6Q99741 560 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 RSPH9Q9H1X1 276 aaPredicted RBP13.1□□□□□ -0.31
SKA1-205ENST00000494518 FBRSQ9HAH7 460 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 METTL14Q9HCE5 456 aaKnown RBP13.1□□□□□ -0.31
SKA1-205ENST00000494518 MAN1B1Q9UKM7 699 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 CTNND2Q9UQB3 1225 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 ERVW-1Q9UQF0 538 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 NCKAP1Q9Y2A7 1128 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 PCDHGB2Q9Y5G2 931 aa13.1□□□□□ -0.31
SKA1-205ENST00000494518 SHROOM3Q8TF72 1996 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms