RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 KIAA0895LQ68EN5 471 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 ISM2Q6H9L7 571 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 MMS22LQ6ZRQ5 1243 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 USP30Q70CQ3 517 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 RRAGAQ7L523 313 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 TMPRSS7Q7RTY8 843 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 CARNMT1Q8N4J0 409 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 HJURPQ8NCD3 748 aaPredicted RBP12.86□□□□□ -0.35
CPSF3-204ENST00000489403 MDM1Q8TC05 714 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 DQX1Q8TE96 717 aaKnown RBP12.86□□□□□ -0.35
CPSF3-204ENST00000489403 IGSF8Q969P0 613 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 SLC39A13Q96H72 371 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 MRGPRX3Q96LB0 322 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 SERPINB11Q96P15 392 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 CDC6Q99741 560 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 GTPBP4Q9BZE4 634 aaKnown RBP12.86□□□□□ -0.35
CPSF3-204ENST00000489403 PABPC3Q9H361 631 aaKnown RBP12.86□□□□□ -0.35
CPSF3-204ENST00000489403 SERGEFQ9UGK8 458 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 TLR6Q9Y2C9 796 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 GPSM3Q9Y4H4 160 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 CACNA1GO43497 2377 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 TYW5A2RUC4 315 aaKnown RBP12.85□□□□□ -0.35
CPSF3-204ENST00000489403 FAM47DPA6NHR8 397 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 GOLGA8CPA6NN73 597 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 MID1O15344 667 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 P4HA2O15460 535 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 ASLP04424 464 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 CTSOP43234 321 aaPredicted RBP12.85□□□□□ -0.35
CPSF3-204ENST00000489403 CTSKP43235 329 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 GPD2P43304 727 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 RPL34P49207 117 aaKnown RBP12.85□□□□□ -0.35
CPSF3-204ENST00000489403 CCT8P50990 548 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 IL9RQ01113 521 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 NNTQ13423 1086 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 STIM1Q13586 685 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 SUZ12Q15022 739 aaKnown RBP12.85□□□□□ -0.35
CPSF3-204ENST00000489403 HNRNPA1L2Q32P51 320 aaKnown RBP12.85□□□□□ -0.35
CPSF3-204ENST00000489403 MS4A13Q5J8X5 152 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 TTI2Q6NXR4 508 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 ADAT2Q7Z6V5 191 aaKnown RBP12.85□□□□□ -0.35
CPSF3-204ENST00000489403 TAC4Q86UU9 113 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 DHX40Q8IX18 779 aaKnown RBP12.85□□□□□ -0.35
CPSF3-204ENST00000489403 CFAP52Q8N1V2 620 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 ADAM32Q8TC27 787 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 FAM149B1Q96BN6 582 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 DHTKD1Q96HY7 919 aaPredicted RBP12.85□□□□□ -0.35
CPSF3-204ENST00000489403 DDX50Q9BQ39 737 aaKnown RBP12.85□□□□□ -0.35
CPSF3-204ENST00000489403 FBXL12Q9NXK8 326 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 XPO7Q9UIA9 1087 aaKnown RBP12.85□□□□□ -0.35
CPSF3-204ENST00000489403 MAN1B1Q9UKM7 699 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 SCML1Q9UN30 329 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 NAALADL1Q9UQQ1 740 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 NCKAP1Q9Y2A7 1128 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 PKD1L2Q7Z442 2459 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 CELSR3Q9NYQ7 3312 aa12.85□□□□□ -0.35
CPSF3-204ENST00000489403 A0A1W2PP55 124 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 A0A1W2PPC4 97 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 GOLGA6L4A6NEF3 574 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 PAPSS1O43252 624 aaPredicted RBP12.84□□□□□ -0.35
CPSF3-204ENST00000489403 TNFSF14O43557 240 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 PCDHGA12O60330 932 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 LUC7L3O95232 432 aaKnown RBP12.84□□□□□ -0.35
CPSF3-204ENST00000489403 MOCS2O96007 188 aaPredicted RBP12.84□□□□□ -0.35
CPSF3-204ENST00000489403 GRK6P43250 576 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 GALCP54803 685 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 GCNT1Q02742 428 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 CETN1Q12798 172 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 CDH18Q13634 790 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 ARID5BQ14865 1188 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 CST6Q15828 149 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 DCAF6Q58WW2 860 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 PITRM1Q5JRX3 1037 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 C9orf64Q5T6V5 341 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 SYPL2Q5VXT5 272 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 KLHL10Q6JEL2 608 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 NCEH1Q6PIU2 408 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 C19orf48Q6RUI8 117 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 MARCH9Q86YJ5 346 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 SCUBE3Q8IX30 993 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 KDM1BQ8NB78 822 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 GANCQ8TET4 914 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 KREMEN1Q96MU8 473 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 TIGD1Q96MW7 591 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 SLC6A18Q96N87 628 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 NEUROG2Q9H2A3 272 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 EBF2Q9HAK2 575 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 ST7Q9NRC1 585 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 ERVW-1Q9UQF0 538 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 LOC400499M0QZD8 3231 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 ITIH6Q6UXX5 1313 aa12.84□□□□□ -0.35
CPSF3-204ENST00000489403 COL5A1P20908 1838 aaPredicted RBP12.83□□□□□ -0.35
CPSF3-204ENST00000489403 A0A1B0GTQ1 180 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 TTC34A8MYJ7 566 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 C10orf142B7Z368 130 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 VILLO15195 856 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 SART1O43290 800 aaKnown RBP12.83□□□□□ -0.36
CPSF3-204ENST00000489403 RNASEH1O60930 286 aaKnown RBP12.83□□□□□ -0.36
CPSF3-204ENST00000489403 RNASEH2AO75792 299 aaKnown RBP12.83□□□□□ -0.36
CPSF3-204ENST00000489403 WNT1P04628 370 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 SRPRAP08240 638 aaKnown RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms