RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 SH2D7A6NKC9 451 aaPredicted RBP4.5□□□□□ -1.69
VPS13D-207ENST00000476169 DBX1A6NMT0 343 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 MARCH11A6NNE9 402 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 MYO1GB0I1T2 1018 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 TBC1D3LB9A6J9 549 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 UBE2CO00762 179 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 SYN3O14994 580 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 DHHO43323 396 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 FAM20BO75063 409 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 NDUFA10O95299 355 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 TBC1D3HP0C7X1 549 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 TNNT1P13805 278 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 GATA3P23771 443 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 ATP5DP30049 168 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 PNPLA4P41247 253 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 ADAM17P78536 824 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 TMF1P82094 1093 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 SP2Q02086 613 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 UBXN1Q04323 297 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 PTP4A2Q12974 167 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 RESTQ13127 1097 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 BFSP2Q13515 415 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 SMC1AQ14683 1233 aaKnown RBP4.5□□□□□ -1.69
VPS13D-207ENST00000476169 ICAM4Q14773 271 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 PRICKLE4Q2TBC4 344 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 RUNDC3AQ59EK9 446 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 ODF2Q5BJF6 829 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 TMEM196Q5HYL7 178 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 TBC1D3GQ6DHY5 549 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 TBC1D3CQ6IPX1 549 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 MSANTD2Q6P1R3 559 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 DENND1BQ6P3S1 775 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 TMEM154Q6P9G4 183 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 ZNF449Q6P9G9 518 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 INO80CQ6PI98 192 aaPredicted RBP4.5□□□□□ -1.69
VPS13D-207ENST00000476169 SLFN11Q7Z7L1 901 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 THNSL1Q8IYQ7 743 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 CCDC170Q8IYT3 715 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 IZUMO1Q8IYV9 350 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 TBC1D3Q8IZP1 549 aaPredicted RBP4.5□□□□□ -1.69
VPS13D-207ENST00000476169 NUP93Q8N1F7 819 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 SYNE4Q8N205 404 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 LRRC71Q8N4P6 559 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 ZNF366Q8N895 744 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 LSM14AQ8ND56 463 aaKnown RBP4.5□□□□□ -1.69
VPS13D-207ENST00000476169 SUN3Q8TAQ9 357 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 NCSTNQ92542 709 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 EDAQ92838 391 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 SNX21Q969T3 373 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 SH3KBP1Q96B97 665 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 ZNF653Q96CK0 615 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 TEPSINQ96N21 525 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 WDR24Q96S15 920 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 PIP5K1AQ99755 562 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 NCAPGQ9BPX3 1015 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 VN1R3Q9BXE9 311 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 CLPBQ9H078 707 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 NDST4Q9H3R1 872 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 SERHL2Q9H4I8 314 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 ARHGEF3Q9NR81 526 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 FBXO28Q9NVF7 368 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 ZDHHC7Q9NXF8 308 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 PPP1R14DQ9NXH3 145 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 KCND2Q9NZV8 630 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 MORF4L1Q9UBU8 362 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 ANAPC5Q9UJX4 755 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 TRPC5Q9UL62 973 aaPredicted RBP4.5□□□□□ -1.69
VPS13D-207ENST00000476169 ENTPD2Q9Y5L3 495 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 ZFP37Q9Y6Q3 630 aaPredicted RBP4.5□□□□□ -1.69
VPS13D-207ENST00000476169 RUSC2Q8N2Y8 1516 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 COL15A1P39059 1388 aa4.5□□□□□ -1.69
VPS13D-207ENST00000476169 TAF4O00268 1085 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 PPM1DO15297 605 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 HNRNPRO43390 633 aaKnown RBP4.49□□□□□ -1.69
VPS13D-207ENST00000476169 CDKL5O76039 1030 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 HEXIM1O94992 359 aaKnown RBP4.49□□□□□ -1.69
VPS13D-207ENST00000476169 VNN1O95497 513 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 METTL18O95568 372 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 GGPS1O95749 300 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 PDHA1P08559 390 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 PEPDP12955 493 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 RARGP13631 454 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 PPP3CBP16298 524 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 DDX6P26196 483 aaKnown RBP eCLIP4.49□□□□□ -1.69
VPS13D-207ENST00000476169 ACRV1P26436 265 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 EEF1DP29692 281 aaKnown RBP4.49□□□□□ -1.69
VPS13D-207ENST00000476169 TM4SF1P30408 202 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 HTR7P34969 479 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 PCP4P48539 62 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 CDK7P50613 346 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 TIRAPP58753 221 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 PSMC6P62333 389 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 FHL3Q13643 280 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 TOB2Q14106 344 aaPredicted RBP4.49□□□□□ -1.69
VPS13D-207ENST00000476169 PUM1Q14671 1186 aaKnown RBP eCLIP4.49□□□□□ -1.699e-7■□□□□ 9.3
VPS13D-207ENST00000476169 CRYMQ14894 314 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 CLCA4Q14CN2 919 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 LY6KQ17RY6 165 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 SLC9A4Q6AI14 798 aa4.49□□□□□ -1.69
VPS13D-207ENST00000476169 ARMC6Q6NXE6 501 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms