RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 OR52K2Q8NGK3 314 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 TTC17Q96AE7 1141 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 SLC2A13Q96QE2 648 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 NUP62CLQ9H1M0 184 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 LHX5Q9H2C1 402 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 IL21RQ9HBE5 538 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 ANLNQ9NQW6 1124 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 SERGEFQ9UGK8 458 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 EIF2B4Q9UI10 523 aaKnown RBP17.26■□□□□ 0.35
USP40-212ENST00000473191 ANGPTL2Q9UKU9 493 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 CNOT1A5YKK6 2376 aaKnown RBP17.25■□□□□ 0.35
USP40-212ENST00000473191 TTC34A8MYJ7 566 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 KCNU1A8MYU2 1149 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 I6L893 689 aaPredicted RBP17.25■□□□□ 0.35
USP40-212ENST00000473191 SIN3BO75182 1162 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 GJB3O75712 270 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 ATP5BP06576 529 aaKnown RBP17.25■□□□□ 0.35
USP40-212ENST00000473191 CEACAM1P13688 526 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 MZF1P28698 734 aaPredicted RBP17.25■□□□□ 0.35
USP40-212ENST00000473191 DPP6P42658 865 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 STK19P49842 368 aaPredicted RBP17.25■□□□□ 0.35
USP40-212ENST00000473191 ATXN3P54252 364 aaPredicted RBP17.25■□□□□ 0.35
USP40-212ENST00000473191 SHC2P98077 582 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 CENPCQ03188 943 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 PTK2Q05397 1052 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 CDH18Q13634 790 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 DRAP1Q14919 205 aaPredicted RBP17.25■□□□□ 0.35
USP40-212ENST00000473191 C2CD6Q53TS8 623 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 SYCP2LQ5T4T6 812 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 OR6B2Q6IFH4 312 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 LAYNQ6UX15 382 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 FAM71AQ8IYT1 594 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 C1orf216Q8TAB5 229 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 FOXJ1Q92949 421 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 IGSF8Q969P0 613 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 RPL10LQ96L21 214 aaKnown RBP17.25■□□□□ 0.35
USP40-212ENST00000473191 NUP58Q9BVL2 599 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 FAM204AQ9H8W3 233 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 SLCO3A1Q9UIG8 710 aa17.25■□□□□ 0.35
USP40-212ENST00000473191 H0Y626 953 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 APOEP02649 317 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 C7P10643 843 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 VAV1P15498 845 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 KLK7P49862 253 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 RAPGEF1Q13905 1077 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 KCNJ12Q14500 433 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 WDR45BQ5MNZ6 344 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 C14orf80Q86SX3 495 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 CADM4Q8NFZ8 388 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 GPT2Q8TD30 523 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 BTN2A3PQ96KV6 586 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 DDX50Q9BQ39 737 aaKnown RBP17.24■□□□□ 0.35
USP40-212ENST00000473191 DDIT4Q9NX09 232 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 TAB2Q9NYJ8 693 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 ERVW-1Q9UQF0 538 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 SNX10Q9Y5X0 201 aa17.24■□□□□ 0.35
USP40-212ENST00000473191 WDFY3Q8IZQ1 3526 aa17.23■□□□□ 0.35
USP40-212ENST00000473191 OPHN1O60890 802 aa17.23■□□□□ 0.35
USP40-212ENST00000473191 ERCC5P28715 1186 aaPredicted RBP17.23■□□□□ 0.35
USP40-212ENST00000473191 OXTRP30559 389 aa17.23■□□□□ 0.35
USP40-212ENST00000473191 NME3Q13232 169 aa17.23■□□□□ 0.35
USP40-212ENST00000473191 C9orf64Q5T6V5 341 aa17.23■□□□□ 0.35
USP40-212ENST00000473191 KLHDC7AQ5VTJ3 777 aa17.23■□□□□ 0.35
USP40-212ENST00000473191 TAF3Q5VWG9 929 aa17.23■□□□□ 0.35
USP40-212ENST00000473191 CXorf57Q6NSI4 855 aaKnown RBP17.23■□□□□ 0.35
USP40-212ENST00000473191 FBXL22Q6P050 247 aa17.23■□□□□ 0.35
USP40-212ENST00000473191 C11orf57Q6ZUT1 292 aaPredicted RBP17.23■□□□□ 0.35
USP40-212ENST00000473191 CCAR2Q8N163 923 aaKnown RBP17.23■□□□□ 0.35
USP40-212ENST00000473191 SNX19Q92543 992 aa17.23■□□□□ 0.35
USP40-212ENST00000473191 FAM81BQ96LP2 452 aa17.23■□□□□ 0.35
USP40-212ENST00000473191 NAA15Q9BXJ9 866 aaKnown RBP17.23■□□□□ 0.35
USP40-212ENST00000473191 IRX2Q9BZI1 471 aaPredicted RBP17.23■□□□□ 0.35
USP40-212ENST00000473191 RSPH9Q9H1X1 276 aaPredicted RBP17.23■□□□□ 0.35
USP40-212ENST00000473191 TMPRSS4Q9NRS4 437 aa17.23■□□□□ 0.35
USP40-212ENST00000473191 DNAAF2Q9NVR5 837 aaKnown RBP17.23■□□□□ 0.35
USP40-212ENST00000473191 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.23■□□□□ 0.35
USP40-212ENST00000473191 ASPMQ8IZT6 3477 aa17.23■□□□□ 0.35
USP40-212ENST00000473191 ZFHX4Q86UP3 3567 aa17.23■□□□□ 0.35
USP40-212ENST00000473191 NYNRINQ9P2P1 1898 aaKnown RBP17.22■□□□□ 0.35
USP40-212ENST00000473191 FRYQ5TBA9 3013 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 A0A1B0GTW7 788 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 TYW5A2RUC4 315 aaKnown RBP17.22■□□□□ 0.35
USP40-212ENST00000473191 C1QTNF9BB2RNN3 333 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 BCAT2O15382 392 aaPredicted RBP17.22■□□□□ 0.35
USP40-212ENST00000473191 SH3BP5O60239 455 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 HSF2BPO75031 334 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 C1QTNF9P0C862 333 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 CYP11B1P15538 503 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 GNSP15586 552 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 PDGFRAP16234 1089 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 KRT9P35527 623 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 METAP1P53582 386 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 CDK17Q00537 523 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 SLC6A3Q01959 620 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 HNRNPA1L2Q32P51 320 aaKnown RBP17.22■□□□□ 0.35
USP40-212ENST00000473191 TCP11X2Q5H9J9 407 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 KCNT1Q5JUK3 1230 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 EFHC1Q5JVL4 640 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 TRNP1Q6NT89 227 aa17.22■□□□□ 0.35
USP40-212ENST00000473191 HDDC3Q8N4P3 179 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms