RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 BPGMP07738 259 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 ARRB2P32121 409 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 CCNFP41002 786 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 ALDH18A1P54886 795 aaKnown RBP19.6■□□□□ 0.73
VIM-203ENST00000469543 KDSRQ06136 332 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 RCN2Q14257 317 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 DLG2Q15700 870 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 FASTKD1Q53R41 847 aaKnown RBP19.6■□□□□ 0.73
VIM-203ENST00000469543 BNIPLQ7Z465 357 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 ACVR1CQ8NER5 493 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 GIMAP7Q8NHV1 300 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 ZNF398Q8TD17 642 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 MFSD3Q96ES6 412 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 NSL1Q96IY1 281 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 CAB39LQ9H9S4 337 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 PPARGC1AQ9UBK2 798 aaKnown RBP19.6■□□□□ 0.73
VIM-203ENST00000469543 CDY2AQ9Y6F7 541 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 RALGAPA2Q2PPJ7 1873 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 H3BRJ5 948 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 GYG2O15488 501 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 GSC2O15499 205 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 ATP9BO43861 1147 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 ALDH1A2O94788 518 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 TGDSO95455 350 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 POMCP01189 267 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 ENO1P06733 434 aaKnown RBP19.6■□□□□ 0.73
VIM-203ENST00000469543 PDE1BQ01064 536 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 CERCAMQ5T4B2 595 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 WDR60Q8WVS4 1066 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 ZNF778Q96MU6 729 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 BTBD10Q9BSF8 475 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 AP5M1Q9H0R1 490 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 STAP1Q9ULZ2 295 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 SHROOM3Q8TF72 1996 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 TRAFD1O14545 582 aaPredicted RBP19.59■□□□□ 0.73
VIM-203ENST00000469543 PTPN3P26045 913 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 CPT1AP50416 773 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 RASSF2P50749 326 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 SESN3P58005 492 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 NIPAL4Q0D2K0 466 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 UBAP2LQ14157 1087 aaKnown RBP19.59■□□□□ 0.73
VIM-203ENST00000469543 PPP2R5DQ14738 602 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 GNASQ5JWF2 1037 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 C2orf69Q8N8R5 385 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 SHKBP1Q8TBC3 707 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 SYT15Q9BQS2 421 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 AGO3Q9H9G7 860 aaKnown RBP19.59■□□□□ 0.73
VIM-203ENST00000469543 SAR1AQ9NR31 198 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 FAM105AQ9NUU6 356 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 TMEM216Q9P0N5 145 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 NUDT5Q9UKK9 219 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 PDCD11Q14690 1871 aaKnown RBP19.59■□□□□ 0.73
VIM-203ENST00000469543 ARL5CA6NH57 179 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 PRKCGP05129 697 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 ITGA2BP08514 1039 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 SRGAP2BP0DMP2 458 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 ESRRAP11474 423 aaPredicted RBP19.59■□□□□ 0.73
VIM-203ENST00000469543 SCNN1AP37088 669 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 GLUD2P49448 558 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 PGFP49763 221 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 DAOAP59103 153 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 SARNPP82979 210 aaKnown RBP19.59■□□□□ 0.73
VIM-203ENST00000469543 ZBTB17Q13105 803 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 CBLBQ13191 982 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 TIGD5Q53EQ6 642 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 FAM35AQ86V20 835 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 CLPTM1LQ96KA5 538 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 SLC2A13Q96QE2 648 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 TMEM209Q96SK2 561 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 ZFATQ9P243 1243 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 KLF11O14901 512 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 CCDC22O60826 627 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 CHRNA1P02708 482 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 LRPAP1P30533 357 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 CD68P34810 354 aaPredicted RBP19.59■□□□□ 0.73
VIM-203ENST00000469543 PDK1Q15118 436 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 PLD6Q8N2A8 252 aaKnown RBP19.59■□□□□ 0.73
VIM-203ENST00000469543 DNAAF3Q8N9W5 541 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 SCAMP5Q8TAC9 235 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 RILPQ96NA2 401 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 CHRAC1Q9NRG0 131 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 LNPEPQ9UIQ6 1025 aa19.59■□□□□ 0.73
VIM-203ENST00000469543 OPHN1O60890 802 aa19.58■□□□□ 0.73
VIM-203ENST00000469543 TPBGLP0DKB5 382 aa19.58■□□□□ 0.73
VIM-203ENST00000469543 CTGFP29279 349 aa19.58■□□□□ 0.73
VIM-203ENST00000469543 FDFT1P37268 417 aa19.58■□□□□ 0.73
VIM-203ENST00000469543 BRCC3P46736 316 aa19.58■□□□□ 0.73
VIM-203ENST00000469543 TPI1P60174 286 aa19.58■□□□□ 0.73
VIM-203ENST00000469543 VWA5B1Q5TIE3 1220 aa19.58■□□□□ 0.73
VIM-203ENST00000469543 GDF6Q6KF10 455 aaPredicted RBP19.58■□□□□ 0.73
VIM-203ENST00000469543 C4orf50Q6ZRC1 276 aa19.58■□□□□ 0.73
VIM-203ENST00000469543 USP33Q8TEY7 942 aa19.58■□□□□ 0.73
VIM-203ENST00000469543 COLEC11Q9BWP8 271 aa19.58■□□□□ 0.73
VIM-203ENST00000469543 OXCT2Q9BYC2 517 aaPredicted RBP19.58■□□□□ 0.73
VIM-203ENST00000469543 TKTL2Q9H0I9 626 aa19.58■□□□□ 0.73
VIM-203ENST00000469543 RNPEPL1Q9HAU8 725 aa19.58■□□□□ 0.73
VIM-203ENST00000469543 OR12D3Q9UGF7 316 aa19.58■□□□□ 0.73
VIM-203ENST00000469543 HACD1B0YJ81 288 aa19.58■□□□□ 0.72
VIM-203ENST00000469543 THP07101 528 aa19.58■□□□□ 0.72
VIM-203ENST00000469543 BDNFP23560 247 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms