RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 GLI1P08151 1106 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 CLCN1P35523 988 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 KRT9P35527 623 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 ZBTB16Q05516 673 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 ST3GAL2Q16842 350 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 VWA3BQ502W6 1294 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 EFHC1Q5JVL4 640 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 SMYD5Q6GMV2 418 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 OR6B2Q6IFH4 312 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 FAM114A1Q8IWE2 563 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 MRGPRX3Q96LB0 322 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 SLC2A13Q96QE2 648 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 ZDHHC5Q9C0B5 715 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 PCED1AQ9H1Q7 454 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 NDST4Q9H3R1 872 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 C6orf106Q9H6K1 298 aaPredicted RBP19.51■□□□□ 0.71
SF3A1-205ENST00000463818 ASNSD1Q9NWL6 643 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 CHD8Q9HCK8 2581 aa19.51■□□□□ 0.71
SF3A1-205ENST00000463818 SYNJ2BP-COX16A0A087WUM0 186 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 SPAARA0A1B0GVQ0 90 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 KCNU1A8MYU2 1149 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 BCAT2O15382 392 aaPredicted RBP19.5■□□□□ 0.71
SF3A1-205ENST00000463818 GJB3O75712 270 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 GRAP2O75791 330 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 DNTTP04053 509 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 SPINK2P20155 84 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 ERCC5P28715 1186 aaPredicted RBP19.5■□□□□ 0.71
SF3A1-205ENST00000463818 CTSOP43234 321 aaPredicted RBP19.5■□□□□ 0.71
SF3A1-205ENST00000463818 GRIK2Q13002 908 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 SLC14A1Q13336 389 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 DPCR1Q3MIW9 517 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 HSP90AA4PQ58FG1 418 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 PITRM1Q5JRX3 1037 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 ZNF776Q68DI1 518 aaPredicted RBP19.5■□□□□ 0.71
SF3A1-205ENST00000463818 DPY19L2P1Q6NXN4 242 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 C11orf57Q6ZUT1 292 aaPredicted RBP19.5■□□□□ 0.71
SF3A1-205ENST00000463818 SLC47A2Q86VL8 602 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 C1orf131Q8NDD1 294 aaKnown RBP19.5■□□□□ 0.71
SF3A1-205ENST00000463818 C1orf216Q8TAB5 229 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 RNF34Q969K3 372 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 NOX5Q96PH1 765 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 TUBGCP2Q9BSJ2 902 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 BTBD1Q9H0C5 482 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 FAM204AQ9H8W3 233 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 DDIT4Q9NX09 232 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 COX16Q9P0S2 106 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 WASF3Q9UPY6 502 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 ERVW-1Q9UQF0 538 aa19.5■□□□□ 0.71
SF3A1-205ENST00000463818 F5H5T6 163 aa19.49■□□□□ 0.71
SF3A1-205ENST00000463818 SIN3BO75182 1162 aa19.49■□□□□ 0.71
SF3A1-205ENST00000463818 KRT37O76014 449 aa19.49■□□□□ 0.71
SF3A1-205ENST00000463818 MOCS3O95396 460 aa19.49■□□□□ 0.71
SF3A1-205ENST00000463818 PNMA6AP0CW24 399 aaPredicted RBP19.49■□□□□ 0.71
SF3A1-205ENST00000463818 SLC2A3P11169 496 aa19.49■□□□□ 0.71
SF3A1-205ENST00000463818 PRKCSHP14314 528 aaPredicted RBP19.49■□□□□ 0.71
SF3A1-205ENST00000463818 ABCB4P21439 1286 aa19.49■□□□□ 0.71
SF3A1-205ENST00000463818 FAM193AP78312 1265 aa19.49■□□□□ 0.71
SF3A1-205ENST00000463818 SIM1P81133 766 aaPredicted RBP19.49■□□□□ 0.71
SF3A1-205ENST00000463818 HNRNPA1L2Q32P51 320 aaKnown RBP19.49■□□□□ 0.71
SF3A1-205ENST00000463818 MIIPQ5JXC2 388 aa19.49■□□□□ 0.71
SF3A1-205ENST00000463818 FAM183BPQ6ZVS7 135 aa19.49■□□□□ 0.71
SF3A1-205ENST00000463818 APCDD1Q8J025 514 aa19.49■□□□□ 0.71
SF3A1-205ENST00000463818 KDM1BQ8NB78 822 aa19.49■□□□□ 0.71
SF3A1-205ENST00000463818 SNX19Q92543 992 aa19.49■□□□□ 0.71
SF3A1-205ENST00000463818 PRMT1Q99873 361 aaKnown RBP19.49■□□□□ 0.71
SF3A1-205ENST00000463818 RSPH9Q9H1X1 276 aaPredicted RBP19.49■□□□□ 0.71
SF3A1-205ENST00000463818 SLCO3A1Q9UIG8 710 aa19.49■□□□□ 0.71
SF3A1-205ENST00000463818 PCNX2A6NKB5 2137 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 TTC34A8MYJ7 566 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 SH3BP5O60239 455 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 RNASEH1O60930 286 aaKnown RBP19.48■□□□□ 0.71
SF3A1-205ENST00000463818 HSF2BPO75031 334 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 SEMA4FO95754 770 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 ERBB2P04626 1255 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 SRPRAP08240 638 aaKnown RBP19.48■□□□□ 0.71
SF3A1-205ENST00000463818 CCR1P32246 355 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 SNX16P57768 344 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 BPIFB4P59827 614 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 ECT2LQ008S8 904 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 C9orf64Q5T6V5 341 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 CLEC17AQ6ZS10 378 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 DHX40Q8IX18 779 aaKnown RBP19.48■□□□□ 0.71
SF3A1-205ENST00000463818 FAM71AQ8IYT1 594 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 GANCQ8TET4 914 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 CAMK1GQ96NX5 476 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 NUP62CLQ9H1M0 184 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 SGK2Q9HBY8 427 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 PLCB1Q9NQ66 1216 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 DACH1Q9UI36 760 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 NCKAP1Q9Y2A7 1128 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 CEP83Q9Y592 693 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 CEP192Q8TEP8 1941 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 CACNA1BQ00975 2339 aa19.48■□□□□ 0.71
SF3A1-205ENST00000463818 CACNA1EQ15878 2313 aa19.47■□□□□ 0.71
SF3A1-205ENST00000463818 CSNK1EP49674 416 aaKnown RBP19.47■□□□□ 0.71
SF3A1-205ENST00000463818 BNC1Q01954 994 aa19.47■□□□□ 0.71
SF3A1-205ENST00000463818 SLC6A3Q01959 620 aa19.47■□□□□ 0.71
SF3A1-205ENST00000463818 KCNMA1Q12791 1236 aa19.47■□□□□ 0.71
SF3A1-205ENST00000463818 HNRNPDQ14103 355 aaKnown RBP19.47■□□□□ 0.71
SF3A1-205ENST00000463818 ARID5BQ14865 1188 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms