RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 RSPH9Q9H1X1 276 aaPredicted RBP16.7■□□□□ 0.26
COL7A1-204ENST00000462475 SGK2Q9HBY8 427 aa16.7■□□□□ 0.26
COL7A1-204ENST00000462475 OSGEPQ9NPF4 335 aa16.7■□□□□ 0.26
COL7A1-204ENST00000462475 SERGEFQ9UGK8 458 aa16.7■□□□□ 0.26
COL7A1-204ENST00000462475 SUN2Q9UH99 717 aa16.7■□□□□ 0.26
COL7A1-204ENST00000462475 XPO7Q9UIA9 1087 aaKnown RBP16.7■□□□□ 0.26
COL7A1-204ENST00000462475 HOOK1Q9UJC3 728 aaKnown RBP16.7■□□□□ 0.26
COL7A1-204ENST00000462475 CTNND2Q9UQB3 1225 aa16.7■□□□□ 0.26
COL7A1-204ENST00000462475 TLR6Q9Y2C9 796 aa16.7■□□□□ 0.26
COL7A1-204ENST00000462475 ANKRD6Q9Y2G4 727 aa16.7■□□□□ 0.26
COL7A1-204ENST00000462475 NBEAQ8NFP9 2946 aa16.7■□□□□ 0.26
COL7A1-204ENST00000462475 PPP1R3GB7ZBB8 358 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 KCNK3O14649 394 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 P4HA2O15460 535 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 SIN3BO75182 1162 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 MOCS2O96007 188 aaPredicted RBP16.69■□□□□ 0.26
COL7A1-204ENST00000462475 IGHV4-34P06331 123 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 ATXN1LP0C7T5 689 aaKnown RBP16.69■□□□□ 0.26
COL7A1-204ENST00000462475 CD27P26842 260 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 GPD2P43304 727 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 RPL34P49207 117 aaKnown RBP16.69■□□□□ 0.26
COL7A1-204ENST00000462475 CETN1Q12798 172 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 NNTQ13423 1086 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 CDH18Q13634 790 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 TEAD4Q15561 434 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 HNRNPA1L2Q32P51 320 aaKnown RBP16.69■□□□□ 0.26
COL7A1-204ENST00000462475 FSCBQ5H9T9 825 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 MS4A13Q5J8X5 152 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 KCNT1Q5JUK3 1230 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 DENND1BQ6P3S1 775 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 DHX40Q8IX18 779 aaKnown RBP16.69■□□□□ 0.26
COL7A1-204ENST00000462475 CFAP52Q8N1V2 620 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 ZNF557Q8N988 423 aaPredicted RBP16.69■□□□□ 0.26
COL7A1-204ENST00000462475 RHBDD1Q8TEB9 315 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 DDX50Q9BQ39 737 aaKnown RBP16.69■□□□□ 0.26
COL7A1-204ENST00000462475 PABPC3Q9H361 631 aaKnown RBP16.69■□□□□ 0.26
COL7A1-204ENST00000462475 ST7Q9NRC1 585 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 LHX6Q9UPM6 363 aa16.69■□□□□ 0.26
COL7A1-204ENST00000462475 TYW5A2RUC4 315 aaKnown RBP16.68■□□□□ 0.26
COL7A1-204ENST00000462475 FAM47DPA6NHR8 397 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 H0Y8X5 98 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 ASLP04424 464 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 PPP1R2P41236 205 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 CTSOP43234 321 aaPredicted RBP16.68■□□□□ 0.26
COL7A1-204ENST00000462475 ST8SIA6P61647 398 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 KCNH2Q12809 1159 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 DCAF6Q58WW2 860 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 PITRM1Q5JRX3 1037 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 SYPL2Q5VXT5 272 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 KIAA0895LQ68EN5 471 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 TRIM59Q8IWR1 403 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 EHBP1Q8NDI1 1231 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 GANCQ8TET4 914 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 CDC6Q99741 560 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 INTS2Q9H0H0 1204 aaKnown RBP16.68■□□□□ 0.26
COL7A1-204ENST00000462475 FBXL12Q9NXK8 326 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 KIAA1522Q9P206 1035 aaPredicted RBP16.68■□□□□ 0.26
COL7A1-204ENST00000462475 KNL1Q8NG31 2342 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 ATRXP46100 2492 aa16.68■□□□□ 0.26
COL7A1-204ENST00000462475 A0A1W2PP55 124 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 GOLGA8CPA6NN73 597 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 TTC34A8MYJ7 566 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 MID1O15344 667 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 SART1O43290 800 aaKnown RBP16.67■□□□□ 0.26
COL7A1-204ENST00000462475 DKK1O94907 266 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 LUC7L3O95232 432 aaKnown RBP16.67■□□□□ 0.26
COL7A1-204ENST00000462475 KRT5P13647 590 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 CTSKP43235 329 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 CCT8P50990 548 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 STX17P56962 302 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 IL9RQ01113 521 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 CST6Q15828 149 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 C9orf64Q5T6V5 341 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 FOXR2Q6PJQ5 311 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 USP30Q70CQ3 517 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 MARCH9Q86YJ5 346 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 LGI2Q8N0V4 545 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 IGSF8Q969P0 613 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 SLC6A18Q96N87 628 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 ACP6Q9NPH0 428 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 CYTH4Q9UIA0 394 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 CNTN6Q9UQ52 1028 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 ERVW-1Q9UQF0 538 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 NCKAP1Q9Y2A7 1128 aa16.67■□□□□ 0.26
COL7A1-204ENST00000462475 BICDL2A1A5D9 508 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 E5RJQ4 531 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 BIN1O00499 593 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 PAPSS1O43252 624 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-204ENST00000462475 AFPP02771 609 aaKnown RBP16.66■□□□□ 0.26
COL7A1-204ENST00000462475 NUMBP49757 651 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 GALCP54803 685 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 PITX1P78337 314 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-204ENST00000462475 MORC3Q14149 939 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 ARID5BQ14865 1188 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 SUZ12Q15022 739 aaKnown RBP16.66■□□□□ 0.26
COL7A1-204ENST00000462475 ZC3H12AQ5D1E8 599 aaKnown RBP16.66■□□□□ 0.26
COL7A1-204ENST00000462475 RAP1GAP2Q684P5 730 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 NCEH1Q6PIU2 408 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 LRSAM1Q6UWE0 723 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 TMPRSS7Q7RTY8 843 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms