RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 LEMD2Q8NC56 503 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 BEST2Q8NFU1 509 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 PJA1Q8NG27 643 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 RASSF8Q8NHQ8 419 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 UHMK1Q8TAS1 419 aaKnown RBP7.84□□□□□ -1.15
USP54-208ENST00000461520 ING5Q8WYH8 240 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 LARP4BQ92615 738 aaKnown RBP7.84□□□□□ -1.15
USP54-208ENST00000461520 RAD54LQ92698 747 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 ELSPBP1Q96BH3 223 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 MBD6Q96DN6 1003 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 MCRS1Q96EZ8 462 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 ZNF512Q96ME7 567 aaPredicted RBP7.84□□□□□ -1.15
USP54-208ENST00000461520 FIZ1Q96SL8 496 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 DDX23Q9BUQ8 820 aaKnown RBP7.84□□□□□ -1.15
USP54-208ENST00000461520 OSBPL6Q9BZF3 934 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 CCSER1Q9C0I3 900 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 IPPKQ9H8X2 491 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 RPF1Q9H9Y2 349 aaKnown RBP7.84□□□□□ -1.15
USP54-208ENST00000461520 SMPD4Q9NXE4 827 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 HSPBP1Q9NZL4 362 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 R4GN57 208 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 CEP250Q9BV73 2442 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 NCOR2Q9Y618 2525 aa7.84□□□□□ -1.15
USP54-208ENST00000461520 FANCMQ8IYD8 2048 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 DMXL1Q9Y485 3027 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 OTOGLQ3ZCN5 2332 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 A0A0B4J269 797 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 MED19A0JLT2 244 aaPredicted RBP7.83□□□□□ -1.16
USP54-208ENST00000461520 OR6C75A6NL08 312 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 PDPK1O15530 556 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 TBCAO75347 108 aaKnown RBP7.83□□□□□ -1.16
USP54-208ENST00000461520 CYP7B1O75881 506 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 LMNAP02545 664 aaKnown RBP7.83□□□□□ -1.16
USP54-208ENST00000461520 CKMP06732 381 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 CEBPBP17676 345 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 TYMPP19971 482 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 MAGEA9P43362 315 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 POU5F1Q01860 360 aaKnown RBP7.83□□□□□ -1.16
USP54-208ENST00000461520 SPAG1Q07617 926 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 PLD1Q13393 1074 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 SPATA1Q5VX52 437 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 VASNQ6EMK4 673 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 SLFN12LQ6IEE8 588 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 USP37Q86T82 979 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.83□□□□□ -1.16
USP54-208ENST00000461520 LRRC15Q8TF66 581 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 RMDN1Q96DB5 314 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 BORCS6Q96GS4 357 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 LOXL4Q96JB6 756 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 NELL2Q99435 816 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 KXD1Q9BQD3 176 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 MSTO1Q9BUK6 570 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 ST6GALNAC4Q9H4F1 302 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 ZHX3Q9H4I2 956 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 ASB7Q9H672 318 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 CPSF3Q9UKF6 684 aaKnown RBP7.83□□□□□ -1.16
USP54-208ENST00000461520 DSEQ9UL01 958 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 DERAQ9Y315 318 aa7.83□□□□□ -1.16
USP54-208ENST00000461520 MIA3Q5JRA6 1907 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 VPS37CA5D8V6 355 aaPredicted RBP7.82□□□□□ -1.16
USP54-208ENST00000461520 NCAM2O15394 837 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 ODC1P11926 461 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 GLULP15104 373 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 FAHP16930 419 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 FCARP24071 287 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 NMT1P30419 496 aaKnown RBP7.82□□□□□ -1.16
USP54-208ENST00000461520 CCR2P41597 374 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 EPHA5P54756 1037 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 LILRA4P59901 499 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 TWF1Q12792 350 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 GPR17Q13304 367 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 MYBPC2Q14324 1141 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 UBXN2BQ14CS0 331 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 PTPAQ15257 358 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 ZXDCQ2QGD7 858 aaPredicted RBP7.82□□□□□ -1.16
USP54-208ENST00000461520 ZBTB41Q5SVQ8 909 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 FOXB2Q5VYV0 432 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 TANGO2Q6ICL3 276 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 SLC39A4Q6P5W5 647 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 DSTYKQ6XUX3 929 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 ZNF720Q7Z2F6 126 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 DGLUCYQ7Z3D6 616 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 DTX3Q8N9I9 347 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 DNASE1L2Q92874 299 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 ZNF669Q96BR6 464 aaPredicted RBP7.82□□□□□ -1.16
USP54-208ENST00000461520 HVCN1Q96D96 273 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 TCEAL4Q96EI5 215 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 EPSTI1Q96J88 318 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 SSBP3Q9BWW4 388 aaPredicted RBP7.82□□□□□ -1.16
USP54-208ENST00000461520 PLA2G2FQ9BZM2 168 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 GPR88Q9GZN0 384 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 ZFP14Q9HCL3 533 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 LTB4R2Q9NPC1 389 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 ASAH2Q9NR71 780 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 CEP72Q9P209 647 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 SEL1LQ9UBV2 794 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 FTSJ1Q9UET6 329 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 ZDHHC9Q9Y397 364 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 C2CD2Q9Y426 696 aa7.82□□□□□ -1.16
USP54-208ENST00000461520 YIPF1Q9Y548 306 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms