RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 OR6Y1Q8NGX8 325 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 THAP4Q8WY91 577 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 MAP4K1Q92918 833 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 CUL5Q93034 780 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 TRIM63Q969Q1 353 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 P2RY11Q96G91 374 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 GPR78Q96P69 363 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 FCRL5Q96RD9 977 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 ISCA1Q9BUE6 129 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 TM2D2Q9BX73 214 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 SEPSECSQ9HD40 501 aaKnown RBP4.49□□□□□ -1.69
USP40-209ENST00000452724 ELOVL5Q9NYP7 299 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 KLHL13Q9P2N7 655 aa4.49□□□□□ -1.69
USP40-209ENST00000452724 SETD1BQ9UPS6 1966 aaKnown RBP4.49□□□□□ -1.69
USP40-209ENST00000452724 SPATA31A5Q5VU36 1347 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 SPATA31A7Q8IWB4 1347 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 CYP3A7-CYP3A51PA0A087WV96 503 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 AGAP5A6NIR3 686 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 E7EVH7 732 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 DSCR3O14972 297 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 INPPL1O15357 1258 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 IRAK2O43187 625 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 FAM155BO75949 473 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 ENO1P06733 434 aaKnown RBP4.48□□□□□ -1.69
USP40-209ENST00000452724 CYP3A7P24462 503 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 ADD2P35612 726 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 RCAN1P53805 252 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 CUL4BQ13620 913 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 DAZAP2Q15038 168 aaPredicted RBP4.48□□□□□ -1.69
USP40-209ENST00000452724 TAF5Q15542 800 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 ZRSR2Q15696 482 aaKnown RBP4.48□□□□□ -1.69
USP40-209ENST00000452724 MEX3CQ5U5Q3 659 aaKnown RBP4.48□□□□□ -1.69
USP40-209ENST00000452724 TMEM88Q6PEY1 159 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 UEVLDQ8IX04 471 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.48□□□□□ -1.69
USP40-209ENST00000452724 PIGOQ8TEQ8 1089 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 CLEC4CQ8WTT0 213 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 PIGKQ92643 395 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 ABHD14AQ9BUJ0 271 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 HTATIP2Q9BUP3 242 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 GATA5Q9BWX5 397 aaPredicted RBP4.48□□□□□ -1.69
USP40-209ENST00000452724 ABHD16BQ9H3Z7 469 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 KIF17Q9P2E2 1029 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 KCND3Q9UK17 655 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 BAG5Q9UL15 447 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 PCDHGB3Q9Y5G1 929 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 PCDHA10Q9Y5I2 948 aa4.48□□□□□ -1.69
USP40-209ENST00000452724 COPG1Q9Y678 874 aaKnown RBP4.48□□□□□ -1.69
USP40-209ENST00000452724 PLEKHD1A6NEE1 506 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 BCAR3O75815 825 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 KRT38O76015 456 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 CNTN5O94779 1100 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 HEXIM1O94992 359 aaKnown RBP4.47□□□□□ -1.69
USP40-209ENST00000452724 PLAUP00749 431 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 CYP21A2P08686 494 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 RFPL3SP0C7P2 107 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 ST6GAL1P15907 406 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 AARSP49588 968 aaKnown RBP eCLIP4.47□□□□□ -1.69
USP40-209ENST00000452724 POLGP54098 1239 aaPredicted RBP4.47□□□□□ -1.69
USP40-209ENST00000452724 ARL4CP56559 192 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 MTA1Q13330 715 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 RABEP1Q15276 862 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 ADCK5Q3MIX3 580 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 ANXA2RQ3ZCQ2 193 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 ANO7Q6IWH7 933 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 DHRS13Q6UX07 377 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 RBM44Q6ZP01 1051 aaKnown RBP4.47□□□□□ -1.69
USP40-209ENST00000452724 SYT13Q7L8C5 426 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 MRPL10Q7Z7H8 261 aaKnown RBP4.47□□□□□ -1.69
USP40-209ENST00000452724 MOGAT3Q86VF5 341 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 SUGP1Q8IWZ8 645 aaKnown RBP4.47□□□□□ -1.69
USP40-209ENST00000452724 ADGRF3Q8IZF5 1079 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 SPPL3Q8TCT6 385 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 SLC2A12Q8TD20 617 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 CSGALNACT1Q8TDX6 532 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 GOLGA1Q92805 767 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 SDCCAG3Q96C92 435 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 SCLT1Q96NL6 688 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 PIGSQ96S52 555 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 MYH16Q9H6N6 1097 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 SFXN1Q9H9B4 322 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 G6PC2Q9NQR9 355 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 ITM2CQ9NQX7 267 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 TMLHEQ9NVH6 421 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 PI4KBQ9UBF8 816 aa4.47□□□□□ -1.69
USP40-209ENST00000452724 EMSYQ7Z589 1322 aa4.46□□□□□ -1.69
USP40-209ENST00000452724 FAM90A20PA6NIJ5 464 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 E5RJQ4 531 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 USP12O75317 370 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 SGPL1O95470 568 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 TFRCP02786 760 aaKnown RBP4.46□□□□□ -1.7
USP40-209ENST00000452724 ALDOCP09972 364 aaKnown RBP4.46□□□□□ -1.7
USP40-209ENST00000452724 AKR1A1P14550 325 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 RPS6KB1P23443 525 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 ATP5F1P24539 256 aaPredicted RBP4.46□□□□□ -1.7
USP40-209ENST00000452724 HOXA7P31268 230 aaPredicted RBP4.46□□□□□ -1.7
USP40-209ENST00000452724 SOX2P48431 317 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 PCP4P48539 62 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 MCM2P49736 904 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 SHC2P98077 582 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms