RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 RFWD3Q6PCD5 774 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 C14orf80Q86SX3 495 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 FAM72BQ86X60 149 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 TMEM25Q86YD3 366 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 RNF135Q8IUD6 432 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 MAP7D3Q8IWC1 876 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 LGI2Q8N0V4 545 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 GJD3Q8N144 294 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 PYROXD2Q8N2H3 581 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 TSC1Q92574 1164 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 HSPH1Q92598 858 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 RPRD1AQ96P16 312 aaPredicted RBP11.95□□□□□ -0.5
SCN9A-204ENST00000452182 VANGL2Q9ULK5 521 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 DUSP12Q9UNI6 340 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 NEU3Q9UQ49 428 aa11.95□□□□□ -0.5
SCN9A-204ENST00000452182 OTOL1A6NHN0 477 aaPredicted RBP11.94□□□□□ -0.5
SCN9A-204ENST00000452182 GGCXP38435 758 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 VCPP55072 806 aaKnown RBP11.94□□□□□ -0.5
SCN9A-204ENST00000452182 TNK2Q07912 1038 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 ATP13A4Q4VNC1 1196 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 TPGS1Q6ZTW0 290 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 CHST9Q7L1S5 443 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 UBL4BQ8N7F7 174 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 ZNF557Q8N988 423 aaPredicted RBP11.94□□□□□ -0.5
SCN9A-204ENST00000452182 EXD1Q8NHP7 514 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 CSGALNACT1Q8TDX6 532 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 DDI1Q8WTU0 396 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 KRT35Q92764 455 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 IGSF8Q969P0 613 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 TBC1D31Q96DN5 1066 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 MYEOVQ96EZ4 313 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 KCTD15Q96SI1 283 aaPredicted RBP11.94□□□□□ -0.5
SCN9A-204ENST00000452182 ZNF670Q9BS34 389 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 BBS2Q9BXC9 721 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 MAGEB5Q9BZ81 275 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 ZYG11BQ9C0D3 744 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 PCDH18Q9HCL0 1135 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 GPATCH2LQ9NWQ4 482 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 GTSE1Q9NYZ3 720 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 JRKLQ9Y4A0 524 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 SNX10Q9Y5X0 201 aa11.94□□□□□ -0.5
SCN9A-204ENST00000452182 A0A1B0GVM2 712 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 TCAF2A6NFQ2 919 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 C3orf70A6NLC5 250 aaPredicted RBP11.93□□□□□ -0.5
SCN9A-204ENST00000452182 H3BRJ5 948 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 TRDMT1O14717 391 aaKnown RBP11.93□□□□□ -0.5
SCN9A-204ENST00000452182 FGF10O15520 208 aaPredicted RBP11.93□□□□□ -0.5
SCN9A-204ENST00000452182 CREB3O43889 395 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 CACNG3O60359 315 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 TSPAN3O60637 253 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 SRGAP2O75044 1071 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 CLDN11O75508 207 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 ZRANB2O95218 330 aaKnown RBP eCLIP11.93□□□□□ -0.5
SCN9A-204ENST00000452182 ADH5P11766 374 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 TYRP14679 529 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 GLULP15104 373 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 RHOQP17081 205 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 KDELR1P24390 212 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 IL4RP24394 825 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 HOXD9P28356 352 aaPredicted RBP11.93□□□□□ -0.5
SCN9A-204ENST00000452182 GJC1P36383 396 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 ARL4AP40617 200 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 EIF2DP41214 584 aaKnown RBP11.93□□□□□ -0.5
SCN9A-204ENST00000452182 SGSHP51688 502 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 CDH4P55283 916 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 CDH6P55285 790 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 RWDD2BP57060 319 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 RPS24P62847 133 aaKnown RBP11.93□□□□□ -0.5
SCN9A-204ENST00000452182 AMPD2Q01433 879 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 DPYSL3Q14195 570 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 TAZQ16635 292 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 GAB4Q2WGN9 574 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 PPP6R3Q5H9R7 873 aaPredicted RBP11.93□□□□□ -0.5
SCN9A-204ENST00000452182 ZNF569Q5MCW4 686 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 RFX8Q6ZV50 586 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 UBALD2Q8IYN6 164 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 RCOR2Q8IZ40 523 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 KCTD6Q8NC69 237 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 RAPGEF5Q92565 580 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 FAF2Q96CS3 445 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 P2RY11Q96G91 374 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 MSANTD3Q96H12 275 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 SLC2A11Q9BYW1 496 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 PRDM16Q9HAZ2 1276 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 DONSONQ9NYP3 566 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 CWC15Q9P013 229 aaKnown RBP11.93□□□□□ -0.5
SCN9A-204ENST00000452182 ZNF212Q9UDV6 495 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 FBXO10Q9UK96 956 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 KIAA1549LQ6ZVL6 1849 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 MYOFQ9NZM1 2061 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 LRRD1A4D1F6 860 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 WASH4PA8MWX3 477 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 NEDD8-MDP1E9PL57 170 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 EEF2KO00418 725 aaKnown RBP11.93□□□□□ -0.5
SCN9A-204ENST00000452182 DDX3YO15523 660 aaKnown RBP11.93□□□□□ -0.5
SCN9A-204ENST00000452182 NARSO43776 548 aaKnown RBP11.93□□□□□ -0.5
SCN9A-204ENST00000452182 TBL1XO60907 577 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 TNNT1P13805 278 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 GOT1P17174 413 aa11.93□□□□□ -0.5
SCN9A-204ENST00000452182 EPHB2P29323 1055 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 134.4 ms