RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 PLXND1Q9Y4D7 1925 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 A0A1W2PPC4 97 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 TRABD2BA6NFA1 517 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 EIF4E1BA6NMX2 242 aaKnown RBP13.78□□□□□ -0.2
HMGB3-204ENST00000448905 E9PAM4 449 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 H0Y8X5 98 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 PIK3R2O00459 728 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 P4HA2O15460 535 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 RNASEH2AO75792 299 aaKnown RBP13.78□□□□□ -0.2
HMGB3-204ENST00000448905 ABCB4P21439 1286 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 SLC8A1P32418 973 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 GALCP54803 685 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 ECT2LQ008S8 904 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 NNTQ13423 1086 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 ARID5BQ14865 1188 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 CST6Q15828 149 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 CCDC157Q569K6 752 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 SCUBE3Q8IX30 993 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 ZC3H3Q8IXZ2 948 aaKnown RBP13.78□□□□□ -0.2
HMGB3-204ENST00000448905 OR2T34Q8NGX1 318 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 MDM1Q8TC05 714 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 HNRNPLLQ8WVV9 542 aaKnown RBP13.78□□□□□ -0.2
HMGB3-204ENST00000448905 TFAP2BQ92481 460 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 ST7Q9NRC1 585 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 AASDHPPTQ9NRN7 309 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 TJP2Q9UDY2 1190 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 FTSJ1Q9UET6 329 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 FZD4Q9ULV1 537 aa13.78□□□□□ -0.2
HMGB3-204ENST00000448905 EDDM13A0A1B0GTR0 161 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 YKT6O15498 198 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 MED7O43513 233 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 SIN3BO75182 1162 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 DKK1O94907 266 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 APOEP02649 317 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 ITGAVP06756 1048 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 C1SP09871 688 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 SLC6A4P31645 630 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 CSKP41240 450 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 CTSKP43235 329 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 ARRB1P49407 418 aaPredicted RBP13.77□□□□□ -0.21
HMGB3-204ENST00000448905 SGSHP51688 502 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 OXCT1P55809 520 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 CYP4F3Q08477 520 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 SLC12A1Q13621 1099 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 FAM133BQ5BKY9 247 aaKnown RBP13.77□□□□□ -0.21
HMGB3-204ENST00000448905 BEND5Q7L4P6 421 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 PDZD3Q86UT5 571 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 TMPRSS12Q86WS5 348 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 MMAAQ8IVH4 418 aaKnown RBP13.77□□□□□ -0.21
HMGB3-204ENST00000448905 DHX40Q8IX18 779 aaKnown RBP13.77□□□□□ -0.21
HMGB3-204ENST00000448905 FMR1NBQ8N0W7 255 aaPredicted RBP13.77□□□□□ -0.21
HMGB3-204ENST00000448905 UBR7Q8N806 425 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 FAM149B1Q96BN6 582 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 MED15Q96RN5 788 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 ELF4Q99607 663 aaPredicted RBP13.77□□□□□ -0.21
HMGB3-204ENST00000448905 NEUROG2Q9H2A3 272 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 SCUBE2Q9NQ36 999 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 TOR4AQ9NXH8 423 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 ERVW-1Q9UQF0 538 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 BTBD3Q9Y2F9 522 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 RAXQ9Y2V3 346 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 DMXL2Q8TDJ6 3036 aa13.77□□□□□ -0.21
HMGB3-204ENST00000448905 PCDH15Q96QU1 1955 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 A0A1B0GTQ1 180 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 RNF225M0QZC1 329 aaPredicted RBP13.76□□□□□ -0.21
HMGB3-204ENST00000448905 MID1O15344 667 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 PAPSS1O43252 624 aaPredicted RBP13.76□□□□□ -0.21
HMGB3-204ENST00000448905 LDOC1O95751 146 aaPredicted RBP13.76□□□□□ -0.21
HMGB3-204ENST00000448905 GNA14O95837 355 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 ADH1BP00325 375 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 IGHV4-34P06331 123 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 SLC2A3P11169 496 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 JUPP14923 745 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 GOT1P17174 413 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 C5AR1P21730 350 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 CD38P28907 300 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 CCR5P51681 352 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 RPS24P62847 133 aaKnown RBP13.76□□□□□ -0.21
HMGB3-204ENST00000448905 SULT2A1Q06520 285 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 SMAD1Q15797 465 aaKnown RBP13.76□□□□□ -0.21
HMGB3-204ENST00000448905 COL28A1Q2UY09 1125 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 MS4A13Q5J8X5 152 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 PITRM1Q5JRX3 1037 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 C9orf64Q5T6V5 341 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 NCEH1Q6PIU2 408 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 SND1Q7KZF4 910 aaKnown RBP eCLIP13.76□□□□□ -0.21
HMGB3-204ENST00000448905 RRAGAQ7L523 313 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 CFAP52Q8N1V2 620 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 EHBP1Q8NDI1 1231 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 SPATA20Q8TB22 786 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 STK32AQ8WU08 396 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 BTN2A3PQ96KV6 586 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 TIGD1Q96MW7 591 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 GDPD2Q9HCC8 539 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 GDF3Q9NR23 364 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.76□□□□□ -0.21
HMGB3-204ENST00000448905 ADAMTS1Q9UHI8 967 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 PCDHGA1Q9Y5H4 931 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 BAHCC1Q9P281 2608 aa13.76□□□□□ -0.21
HMGB3-204ENST00000448905 IGF2RP11717 2491 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms