RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 WDR17Q8IZU2 1322 aa3.95□□□□□ -1.78
VPS41-207ENST00000439468 TMEM232C9JQI7 657 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 MT-CO3P00414 261 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 CHRM5P08912 532 aaPredicted RBP3.94□□□□□ -1.78
VPS41-207ENST00000439468 CSF1P09603 554 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 CYP2A6P11509 494 aaPredicted RBP3.94□□□□□ -1.78
VPS41-207ENST00000439468 MMP8P22894 467 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 GRK5P34947 590 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 PTGER1P34995 402 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 STAT6P42226 847 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 PLCD1P51178 756 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 CCR5P51681 352 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 RCAN1P53805 252 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 SHC2P98077 582 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 CFHR3Q02985 330 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 DCTN1Q14203 1278 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 ZNF425Q6IV72 752 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 TMEM65Q6PI78 240 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 C1QL2Q7Z5L3 287 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 HEATR4Q86WZ0 1026 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 TMTC1Q8IUR5 882 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 GALNT16Q8N428 558 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 TMEM57Q8N5G2 664 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 C8orf58Q8NAV2 365 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 PRSS3P2Q8NHM4 247 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 HERVK_113Q902F9 699 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 NAF1Q96HR8 494 aaKnown RBP3.94□□□□□ -1.78
VPS41-207ENST00000439468 GPR78Q96P69 363 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 EFHD1Q9BUP0 239 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 CINPQ9BW66 212 aaPredicted RBP3.94□□□□□ -1.78
VPS41-207ENST00000439468 KCNK9Q9NPC2 374 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 NDUFAF4Q9P032 175 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 DNAJC16Q9Y2G8 782 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 DERAQ9Y315 318 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 UBE2J1Q9Y385 318 aaPredicted RBP3.94□□□□□ -1.78
VPS41-207ENST00000439468 HEMK1Q9Y5R4 338 aaPredicted RBP3.94□□□□□ -1.78
VPS41-207ENST00000439468 ZNF521Q96K83 1311 aa3.94□□□□□ -1.78
VPS41-207ENST00000439468 PRYO14603 147 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 DSCR3O14972 297 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 TP73O15350 636 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 BMP15O95972 392 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 ACP5P13686 325 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 CPA1P15085 419 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 VPS41P49754 854 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 PAPOLAP51003 745 aaKnown RBP3.93□□□□□ -1.78
VPS41-207ENST00000439468 TAS2R50P59544 299 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 WDR5P61964 334 aaKnown RBP3.93□□□□□ -1.78
VPS41-207ENST00000439468 G3BP1Q13283 466 aaKnown RBP eCLIP3.93□□□□□ -1.78
VPS41-207ENST00000439468 SLC14A1Q13336 389 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 DGAT2L7PQ6IED9 249 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 ANKS1BQ7Z6G8 1248 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 ESX1Q8N693 406 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 LINC01465Q8N7H1 131 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 NGDNQ8NEJ9 315 aaKnown RBP3.93□□□□□ -1.78
VPS41-207ENST00000439468 OR52L2PQ8NGH6 319 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 ADAMTS18Q8TE60 1221 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 GLMPQ8WWB7 406 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 AKAP1Q92667 903 aaKnown RBP eCLIP3.93□□□□□ -1.78
VPS41-207ENST00000439468 STAMQ92783 540 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 USP13Q92995 863 aaPredicted RBP3.93□□□□□ -1.78
VPS41-207ENST00000439468 ARRDC3Q96B67 414 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 SDCCAG3Q96C92 435 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 KTI12Q96EK9 354 aaPredicted RBP3.93□□□□□ -1.78
VPS41-207ENST00000439468 RBM17Q96I25 401 aaKnown RBP3.93□□□□□ -1.78
VPS41-207ENST00000439468 FAR2Q96K12 515 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 TWNKQ96RR1 684 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 FAM118BQ9BPY3 351 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 ADGRE3Q9BY15 652 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 PRSS22Q9GZN4 317 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 RXFP3Q9NSD7 469 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 PNMA2Q9UL42 364 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 NFU1Q9UMS0 254 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 BTBD3Q9Y2F9 522 aa3.93□□□□□ -1.78
VPS41-207ENST00000439468 RRP7AQ9Y3A4 280 aaKnown RBP3.93□□□□□ -1.78
VPS41-207ENST00000439468 CHN1P15882 459 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 SFPQP23246 707 aaKnown RBP eCLIP3.92□□□□□ -1.78
VPS41-207ENST00000439468 DUSP1P28562 367 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 SLC37A1P57057 533 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 SSBP2P81877 361 aaPredicted RBP3.92□□□□□ -1.78
VPS41-207ENST00000439468 POU5F1BQ06416 359 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 KPNB1Q14974 876 aaKnown RBP3.92□□□□□ -1.78
VPS41-207ENST00000439468 RABEP1Q15276 862 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 CC2D1BQ5T0F9 858 aaKnown RBP3.92□□□□□ -1.78
VPS41-207ENST00000439468 PXDC1Q5TGL8 231 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 JAKMIP3Q5VZ66 844 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 CCDC70Q6NSX1 233 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 WDR93Q6P2C0 686 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 TMED8Q6PL24 325 aaPredicted RBP3.92□□□□□ -1.78
VPS41-207ENST00000439468 DCDC5Q6ZRR9 648 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 C16orf71Q8IYS4 520 aaPredicted RBP3.92□□□□□ -1.78
VPS41-207ENST00000439468 IL17REQ8NFR9 667 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 CUL5Q93034 780 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 HVCN1Q96D96 273 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 TBATAQ96M53 351 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 FCRL4Q96PJ5 515 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 REEP2Q9BRK0 252 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 HDHD5Q9BXW7 423 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 CLPBQ9H078 707 aa3.92□□□□□ -1.78
VPS41-207ENST00000439468 OSBPL5Q9H0X9 879 aaPredicted RBP3.92□□□□□ -1.78
VPS41-207ENST00000439468 PDE11AQ9HCR9 933 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms