RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 PIGZQ86VD9 579 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 REXO1L1PQ8IX06 675 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 NUP93Q8N1F7 819 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 KDF1Q8NAX2 398 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-208ENST00000437607 C3orf20Q8ND61 904 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 DEFB124Q8NES8 71 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 SCAMP5Q8TAC9 235 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 ZNF564Q8TBZ8 553 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-208ENST00000437607 HMGB4Q8WW32 186 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 GATA6Q92908 595 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 C18orf8Q96DM3 657 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 ARHGEF26Q96DR7 871 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 SMOQ99835 787 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 SELENOOQ9BVL4 669 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 NUP85Q9BW27 656 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 ADAM33Q9BZ11 813 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 CCSER2Q9H7U1 834 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 MRPL47Q9HD33 250 aaKnown RBP12.64□□□□□ -0.39
PTPRF-208ENST00000437607 IL37Q9NZH6 218 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 UVRAGQ9P2Y5 699 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 CHORDC1Q9UHD1 332 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-208ENST00000437607 CYTH4Q9UIA0 394 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 ATRXP46100 2492 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 GOLGA8SH3BPF8 625 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 TULP2O00295 520 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 TRIM24O15164 1050 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 SART1O43290 800 aaKnown RBP12.63□□□□□ -0.39
PTPRF-208ENST00000437607 ADH1CP00326 375 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 CYP1A2P05177 515 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 ZDHHC11BP0C7U3 371 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 LCP1P13796 627 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 DESP17661 470 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 PGFP49763 221 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 PTP4A2Q12974 167 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 C2CD6Q53TS8 623 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 EOGTQ5NDL2 527 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 FAM102AQ5T9C2 384 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-208ENST00000437607 SNX30Q5VWJ9 437 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 OR6B2Q6IFH4 312 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 PMF1Q6P1K2 205 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 SLC23A3Q6PIS1 610 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 FAM183BPQ6ZVS7 135 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 DDX42Q86XP3 938 aaKnown RBP eCLIP12.63□□□□□ -0.39
PTPRF-208ENST00000437607 MIB1Q86YT6 1006 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 ZDHHC17Q8IUH5 632 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 SYT12Q8IV01 421 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 BBS7Q8IWZ6 715 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 WDTC1Q8N5D0 677 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 NAT16Q8N8M0 369 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 ZMIZ2Q8NF64 920 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 SLC35F5Q8WV83 523 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 OVCA2Q8WZ82 227 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 FBXO32Q969P5 355 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 CALR3Q96L12 384 aaKnown RBP12.63□□□□□ -0.39
PTPRF-208ENST00000437607 C16orf45Q96MC5 204 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-208ENST00000437607 SCNM1Q9BWG6 230 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 SLC4A5Q9BY07 1137 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 CSNK1G1Q9HCP0 422 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 POLMQ9NP87 494 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-208ENST00000437607 FSCN3Q9NQT6 498 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 PARVAQ9NVD7 372 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 TBC1D14Q9P2M4 693 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 PILRBQ9UKJ0 227 aa12.63□□□□□ -0.39
PTPRF-208ENST00000437607 NUMA1Q14980 2115 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 TCRBV21S2A2A0A5A6 115 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 FAM92AA1XBS5 289 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-208ENST00000437607 KIF2AO00139 706 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-208ENST00000437607 PIK3R2O00459 728 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 HOXC11O43248 304 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-208ENST00000437607 BUB1O43683 1085 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 GREM1O60565 184 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 TULP3O75386 442 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 BEST1O76090 585 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 FBXO21O94952 628 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 RTN3O95197 1032 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-208ENST00000437607 MOCS3O95396 460 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 ENGP17813 658 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 GABRG2P18507 467 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 ITPKAP23677 461 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 MAPK8P45983 427 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 GABRB2P47870 512 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 SLC5A3P53794 718 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 GAD2Q05329 585 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 SPDYCQ5MJ68 293 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 HECTD3Q5T447 861 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 DCUN1D2Q6PH85 259 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 PIP4P1Q86T03 277 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 XYLT1Q86Y38 959 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 TMEM25Q86YD3 366 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 RNF10Q8N5U6 811 aaKnown RBP12.62□□□□□ -0.39
PTPRF-208ENST00000437607 PDZD8Q8NEN9 1154 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 TRIM58Q8NG06 486 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 KCTD13Q8WZ19 329 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 OTUB2Q96DC9 234 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 SPACA7Q96KW9 195 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 MCEEQ96PE7 176 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 CD248Q9HCU0 757 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 METTL5Q9NRN9 209 aaKnown RBP12.62□□□□□ -0.39
PTPRF-208ENST00000437607 GMIPQ9P107 970 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms