RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 SCLYQ96I15 445 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 SNX27Q96L92 541 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 ATP13A1Q9HD20 1204 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 FARP1Q9Y4F1 1045 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-204ENST00000412568 PSMD3O43242 534 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 HOXA2O43364 376 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 RPL17P18621 184 aaKnown RBP11.45□□□□□ -0.58
PTPRF-204ENST00000412568 PEX5P50542 639 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 PHEXP78562 749 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 KRT33BQ14525 404 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 POLD3Q15054 466 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-204ENST00000412568 CA9Q16790 459 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 ZNF792Q3KQV3 632 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 RABGAP1LQ5R372 815 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 THEMIS2Q5TEJ8 643 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 ANKRD22Q5VYY1 191 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 C4orf22Q6V702 233 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 PRPF39Q86UA1 669 aaKnown RBP11.45□□□□□ -0.58
PTPRF-204ENST00000412568 CFAP52Q8N1V2 620 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 CCDC185Q8N715 623 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 SERPINB11Q96P15 392 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 KLHL5Q96PQ7 755 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 SRPK1Q96SB4 655 aaKnown RBP11.45□□□□□ -0.58
PTPRF-204ENST00000412568 SERPINI1Q99574 410 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 PTPRHQ9HD43 1115 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 OLA1Q9NTK5 396 aaKnown RBP11.45□□□□□ -0.58
PTPRF-204ENST00000412568 EPS15L1Q9UBC2 864 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 STK25O00506 426 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 CREB1P16220 341 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 IL1R2P27930 398 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 PTGIRP43119 386 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 GPD2P43304 727 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 AQP5P55064 265 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 NME5P56597 212 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 N4BP2L1Q5TBK1 243 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-204ENST00000412568 ZNF470Q6ECI4 717 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.45□□□□□ -0.58
PTPRF-204ENST00000412568 ATXN2LQ8WWM7 1075 aaKnown RBP11.45□□□□□ -0.58
PTPRF-204ENST00000412568 NSL1Q96IY1 281 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 ARHGAP39Q9C0H5 1083 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 MRPL46Q9H2W6 279 aaKnown RBP11.45□□□□□ -0.58
PTPRF-204ENST00000412568 SIX4Q9UIU6 781 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 DRG1Q9Y295 367 aaKnown RBP11.45□□□□□ -0.58
PTPRF-204ENST00000412568 DNAJC16Q9Y2G8 782 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 GIT1Q9Y2X7 761 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 COL1A2P08123 1366 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 CA12O43570 354 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 LGR5O75473 907 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 GDF10P55107 478 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 POLNQ7Z5Q5 900 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 LCA5Q86VQ0 697 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 LPCAT1Q8NF37 534 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 RFWD2Q8NHY2 731 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 SCAMP5Q8TAC9 235 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 CKAP2Q8WWK9 683 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 P2RY11Q96G91 374 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 FCRL2Q96LA5 508 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-204ENST00000412568 SH3GL3Q99963 347 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 SDCBP2Q9H190 292 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 FAM96AQ9H5X1 160 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 FAM53CQ9NYF3 392 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 PLK2Q9NYY3 685 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 GABRQQ9UN88 632 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 CRYL1Q9Y2S2 319 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 CACNA1SQ13698 1873 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 SLX4Q8IY92 1834 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 A0A0A0MRY4 1105 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 XPO1O14980 1071 aaKnown RBP11.44□□□□□ -0.58
PTPRF-204ENST00000412568 GJA5P36382 358 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 NR2C2P49116 596 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 RHOAP61586 193 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 ELAVL2Q12926 359 aaKnown RBP11.44□□□□□ -0.58
PTPRF-204ENST00000412568 CCDC142Q17RM4 750 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 SLC30A9Q6PML9 568 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 PLD5Q8N7P1 536 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 SPATA13Q96N96 652 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 CSPG4P5Q96PW8 444 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 RXFP1Q9HBX9 757 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 LRRC4CQ9HCJ2 640 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 BATF3Q9NR55 127 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 TMPRSS4Q9NRS4 437 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 ABCC13Q9NSE7 274 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 GRHL1Q9NZI5 618 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 ARMCX1Q9P291 453 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 TJP1Q07157 1748 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 YJEFN3A6XGL0 299 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 ERI2A8K979 691 aaKnown RBP11.44□□□□□ -0.58
PTPRF-204ENST00000412568 E7ENQ6 273 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 FAM155BO75949 473 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 ITGAVP06756 1048 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 STMN1P16949 149 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 KLRC2P26717 231 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 ADRA1BP35368 520 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 MMP13P45452 471 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 OGDHQ02218 1023 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 TARBP2Q15633 366 aaKnown RBP11.44□□□□□ -0.58
PTPRF-204ENST00000412568 PSMD5Q16401 504 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 GDF6Q6KF10 455 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-204ENST00000412568 SZRD1Q7Z422 152 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 KCNMB4Q86W47 210 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms