RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 SIX6OS1Q8N1H7 587 aa29.61■■■□□ 2.33
HMGB1-205ENST00000399494 VPS16Q9H269 839 aa29.61■■■□□ 2.33
HMGB1-205ENST00000399494 CNGB3Q9NQW8 809 aa29.61■■■□□ 2.33
HMGB1-205ENST00000399494 ZBTB32Q9Y2Y4 487 aaPredicted RBP29.61■■■□□ 2.33
HMGB1-205ENST00000399494 PLXNB3Q9ULL4 1909 aa29.61■■■□□ 2.33
HMGB1-205ENST00000399494 NBEAQ8NFP9 2946 aa29.61■■■□□ 2.33
HMGB1-205ENST00000399494 SETSIPP0DME0 302 aa29.6■■■□□ 2.33
HMGB1-205ENST00000399494 PABPC1P11940 636 aaKnown RBP29.6■■■□□ 2.33
HMGB1-205ENST00000399494 AFF3P51826 1226 aaKnown RBP29.6■■■□□ 2.33
HMGB1-205ENST00000399494 RPS14P62263 151 aaKnown RBP29.6■■■□□ 2.33
HMGB1-205ENST00000399494 COL9A2Q14055 689 aaPredicted RBP29.6■■■□□ 2.33
HMGB1-205ENST00000399494 ARHGAP44Q17R89 818 aa29.6■■■□□ 2.33
HMGB1-205ENST00000399494 MBLAC2Q68D91 279 aa29.6■■■□□ 2.33
HMGB1-205ENST00000399494 AHI1Q8N157 1196 aa29.6■■■□□ 2.33
HMGB1-205ENST00000399494 WFDC5Q8TCV5 224 aa29.6■■■□□ 2.33
HMGB1-205ENST00000399494 SNX19Q92543 992 aa29.6■■■□□ 2.33
HMGB1-205ENST00000399494 OSGEPQ9NPF4 335 aa29.6■■■□□ 2.33
HMGB1-205ENST00000399494 RNF225M0QZC1 329 aaPredicted RBP29.59■■■□□ 2.33
HMGB1-205ENST00000399494 DLDP09622 509 aaKnown RBP29.59■■■□□ 2.33
HMGB1-205ENST00000399494 LCP1P13796 627 aa29.59■■■□□ 2.33
HMGB1-205ENST00000399494 APBA1Q02410 837 aa29.59■■■□□ 2.33
HMGB1-205ENST00000399494 ZBTB16Q05516 673 aa29.59■■■□□ 2.33
HMGB1-205ENST00000399494 KIF19Q2TAC6 998 aa29.59■■■□□ 2.33
HMGB1-205ENST00000399494 MPP7Q5T2T1 576 aa29.59■■■□□ 2.33
HMGB1-205ENST00000399494 PIK3R6Q5UE93 754 aa29.59■■■□□ 2.33
HMGB1-205ENST00000399494 MSANTD2Q6P1R3 559 aa29.59■■■□□ 2.33
HMGB1-205ENST00000399494 LCLAT1Q6UWP7 414 aa29.59■■■□□ 2.33
HMGB1-205ENST00000399494 RHBDD1Q8TEB9 315 aa29.59■■■□□ 2.33
HMGB1-205ENST00000399494 SLC35F5Q8WV83 523 aa29.59■■■□□ 2.33
HMGB1-205ENST00000399494 TFAP2BQ92481 460 aa29.59■■■□□ 2.33
HMGB1-205ENST00000399494 BPIFA3Q9BQP9 254 aa29.59■■■□□ 2.33
HMGB1-205ENST00000399494 FBRSQ9HAH7 460 aa29.59■■■□□ 2.33
HMGB1-205ENST00000399494 TOR4AQ9NXH8 423 aa29.59■■■□□ 2.33
HMGB1-205ENST00000399494 GOLGA6L7A0A1B0GV03 622 aa29.58■■■□□ 2.33
HMGB1-205ENST00000399494 SMTNL1A8MU46 457 aa29.58■■■□□ 2.33
HMGB1-205ENST00000399494 MUC22E2RYF6 1773 aaPredicted RBP29.58■■■□□ 2.33
HMGB1-205ENST00000399494 IGLV3-27P01718 113 aa29.58■■■□□ 2.33
HMGB1-205ENST00000399494 USP8P40818 1118 aa29.58■■■□□ 2.33
HMGB1-205ENST00000399494 ATRXP46100 2492 aa29.58■■■□□ 2.33
HMGB1-205ENST00000399494 NUMA1Q14980 2115 aa29.58■■■□□ 2.33
HMGB1-205ENST00000399494 FKBP15Q5T1M5 1219 aa29.58■■■□□ 2.33
HMGB1-205ENST00000399494 PMF1Q6P1K2 205 aa29.58■■■□□ 2.33
HMGB1-205ENST00000399494 RFWD3Q6PCD5 774 aa29.58■■■□□ 2.33
HMGB1-205ENST00000399494 BIRC7Q96CA5 298 aa29.58■■■□□ 2.33
HMGB1-205ENST00000399494 IRX2Q9BZI1 471 aaPredicted RBP29.58■■■□□ 2.33
HMGB1-205ENST00000399494 BTBD1Q9H0C5 482 aa29.58■■■□□ 2.33
HMGB1-205ENST00000399494 TM9SF3Q9HD45 589 aa29.58■■■□□ 2.33
HMGB1-205ENST00000399494 SUN2Q9UH99 717 aa29.58■■■□□ 2.33
HMGB1-205ENST00000399494 SNX11Q9Y5W9 270 aa29.58■■■□□ 2.33
HMGB1-205ENST00000399494 ANKRD11Q6UB99 2663 aaPredicted RBP29.57■■■□□ 2.32
HMGB1-205ENST00000399494 FLRT2O43155 660 aa29.57■■■□□ 2.32
HMGB1-205ENST00000399494 DKK1O94907 266 aa29.57■■■□□ 2.32
HMGB1-205ENST00000399494 SEMA4FO95754 770 aa29.57■■■□□ 2.32
HMGB1-205ENST00000399494 ATP5BP06576 529 aaKnown RBP29.57■■■□□ 2.32
HMGB1-205ENST00000399494 ATXN1LP0C7T5 689 aaKnown RBP29.57■■■□□ 2.32
HMGB1-205ENST00000399494 CD70P32970 193 aa29.57■■■□□ 2.32
HMGB1-205ENST00000399494 ZNF165P49910 485 aa29.57■■■□□ 2.32
HMGB1-205ENST00000399494 LMLNQ96KR4 655 aa29.57■■■□□ 2.32
HMGB1-205ENST00000399494 CDC6Q99741 560 aa29.57■■■□□ 2.32
HMGB1-205ENST00000399494 ANKRD6Q9Y2G4 727 aa29.57■■■□□ 2.32
HMGB1-205ENST00000399494 GPSM3Q9Y4H4 160 aa29.57■■■□□ 2.32
HMGB1-205ENST00000399494 ITPR1Q14643 2758 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 TBL1XO60907 577 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 DNTTP04053 509 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 POLR2EP19388 210 aaKnown RBP29.56■■■□□ 2.32
HMGB1-205ENST00000399494 BRD2P25440 801 aaKnown RBP29.56■■■□□ 2.32
HMGB1-205ENST00000399494 SLC6A4P31645 630 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 RGS7P49802 495 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 NCAPHQ15003 741 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 SUZ12Q15022 739 aaKnown RBP29.56■■■□□ 2.32
HMGB1-205ENST00000399494 STILQ15468 1287 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 FAM133BQ5BKY9 247 aaKnown RBP29.56■■■□□ 2.32
HMGB1-205ENST00000399494 TMPRSS7Q7RTY8 843 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 UNC45BQ8IWX7 931 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 IRGQQ8WZA9 623 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 AZIN2Q96A70 460 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 ZSWIM1Q9BR11 485 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 FUCA2Q9BTY2 467 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 CCDC86Q9H6F5 360 aaKnown RBP29.56■■■□□ 2.32
HMGB1-205ENST00000399494 SIX2Q9NPC8 291 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 DNAJC12Q9UKB3 198 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 CNTN6Q9UQ52 1028 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 BTBD3Q9Y2F9 522 aa29.56■■■□□ 2.32
HMGB1-205ENST00000399494 ACSL4O60488 711 aa29.55■■■□□ 2.32
HMGB1-205ENST00000399494 COPB1P53618 953 aaKnown RBP29.55■■■□□ 2.32
HMGB1-205ENST00000399494 TEAD4Q15561 434 aa29.55■■■□□ 2.32
HMGB1-205ENST00000399494 CNGA2Q16280 664 aa29.55■■■□□ 2.32
HMGB1-205ENST00000399494 MTG2Q9H4K7 406 aa29.55■■■□□ 2.32
HMGB1-205ENST00000399494 SGK2Q9HBY8 427 aa29.55■■■□□ 2.32
HMGB1-205ENST00000399494 LIMA1Q9UHB6 759 aaKnown RBP29.55■■■□□ 2.32
HMGB1-205ENST00000399494 LAMA5O15230 3695 aa29.55■■■□□ 2.32
HMGB1-205ENST00000399494 PTPRBP23467 1997 aa29.54■■■□□ 2.32
HMGB1-205ENST00000399494 BECN2A8MW95 431 aa29.54■■■□□ 2.32
HMGB1-205ENST00000399494 PIK3R2O00459 728 aa29.54■■■□□ 2.32
HMGB1-205ENST00000399494 KCNK3O14649 394 aa29.54■■■□□ 2.32
HMGB1-205ENST00000399494 IRAK2O43187 625 aa29.54■■■□□ 2.32
HMGB1-205ENST00000399494 CALCAP01258 141 aa29.54■■■□□ 2.32
HMGB1-205ENST00000399494 CD27P26842 260 aa29.54■■■□□ 2.32
HMGB1-205ENST00000399494 GRIA4P48058 902 aa29.54■■■□□ 2.32
HMGB1-205ENST00000399494 SLC11A2P49281 568 aa29.54■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms