RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MYLK2Q9H1R3 596 aa2.52□□□□□ -2.01
VPS13A-206ENST00000376646 MYH16Q9H6N6 1097 aa2.52□□□□□ -2.01
VPS13A-206ENST00000376646 PRDM16Q9HAZ2 1276 aa2.52□□□□□ -2.01
VPS13A-206ENST00000376646 FBXO4Q9UKT5 387 aa2.52□□□□□ -2.01
VPS13A-206ENST00000376646 TRIP12Q14669 1992 aaPredicted RBP2.51□□□□□ -2.01
VPS13A-206ENST00000376646 LOC102724159A0A0B4J2E5 919 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 CXorf65A6NEN9 183 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 LACTBL1A8MY62 500 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 RHODO00212 210 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 PODXLO00592 558 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 SLC28A2O43868 658 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 PPP6R2O75170 966 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 CNTN5O94779 1100 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 CER1O95813 267 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 NGFRP08138 427 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 POLD2P49005 469 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 IFIT5Q13325 482 aaKnown RBP2.51□□□□□ -2.01
VPS13A-206ENST00000376646 PWP2Q15269 919 aaKnown RBP2.51□□□□□ -2.01
VPS13A-206ENST00000376646 DLGAP5Q15398 846 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 GORABQ5T7V8 394 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 ANKRD40Q6AI12 368 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 XRRA1Q6P2D8 792 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 TLDC1Q6P9B6 456 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 CTU1Q7Z7A3 348 aaKnown RBP2.51□□□□□ -2.01
VPS13A-206ENST00000376646 FAM186BQ8IYM0 893 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 ADGRF3Q8IZF5 1079 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 SPICE1Q8N0Z3 855 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 VPS37AQ8NEZ2 397 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 IPO4Q8TEX9 1081 aaKnown RBP2.51□□□□□ -2.01
VPS13A-206ENST00000376646 TMEM174Q8WUU8 243 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 OVCA2Q8WZ82 227 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 IP6K1Q92551 441 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 CCDC138Q96M89 665 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 OSBPL5Q9H0X9 879 aaPredicted RBP2.51□□□□□ -2.01
VPS13A-206ENST00000376646 NLRC4Q9NPP4 1024 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 FBXO28Q9NVF7 368 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 LAMP3Q9UQV4 416 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 PNMA6EA0A0J9YXQ4 647 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 PLEKHD1A6NEE1 506 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 PRR23D1E9PI22 279 aaPredicted RBP2.51□□□□□ -2.01
VPS13A-206ENST00000376646 PCDH17O14917 1159 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 PRR23D2P0DMB1 279 aaPredicted RBP2.51□□□□□ -2.01
VPS13A-206ENST00000376646 T-ENOLP0DO92 83 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 KRT10P13645 584 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 KLRK1P26718 216 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 HTR3AP46098 478 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 TM4SF4P48230 202 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 NSUN2Q08J23 767 aaKnown RBP eCLIP2.51□□□□□ -2.01
VPS13A-206ENST00000376646 MORC3Q14149 939 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 MAPKAPK3Q16644 382 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 FBXO38Q6PIJ6 1188 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 RASGRP3Q8IV61 690 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 NEUROG1Q92886 237 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 CTAGE1Q96RT6 745 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 WWOXQ9NZC7 414 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 RAB21Q9UL25 225 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 SLC8A2Q9UPR5 921 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 PCDHGB2Q9Y5G2 931 aa2.51□□□□□ -2.01
VPS13A-206ENST00000376646 SPATA31A5Q5VU36 1347 aa2.5□□□□□ -2.01
VPS13A-206ENST00000376646 SPATA31A7Q8IWB4 1347 aa2.5□□□□□ -2.01
VPS13A-206ENST00000376646 C4orf47A7E2U8 309 aa2.5□□□□□ -2.01
VPS13A-206ENST00000376646 PRPF4O43172 522 aaKnown RBP eCLIP2.5□□□□□ -2.01
VPS13A-206ENST00000376646 USP12O75317 370 aa2.5□□□□□ -2.01
VPS13A-206ENST00000376646 NFATC1O95644 943 aa2.5□□□□□ -2.01
VPS13A-206ENST00000376646 FAM3BP58499 235 aaPredicted RBP2.5□□□□□ -2.01
VPS13A-206ENST00000376646 ARL13AQ5H913 290 aaPredicted RBP2.5□□□□□ -2.01
VPS13A-206ENST00000376646 USP17L6PQ6QN14 398 aa2.5□□□□□ -2.01
VPS13A-206ENST00000376646 TOGARAM2Q6ZUX3 1019 aa2.5□□□□□ -2.01
VPS13A-206ENST00000376646 EXD3Q8N9H8 876 aa2.5□□□□□ -2.01
VPS13A-206ENST00000376646 ZNF566Q969W8 418 aa2.5□□□□□ -2.01
VPS13A-206ENST00000376646 MIB2Q96AX9 1013 aa2.5□□□□□ -2.01
VPS13A-206ENST00000376646 ZNF419Q96HQ0 510 aaPredicted RBP2.5□□□□□ -2.01
VPS13A-206ENST00000376646 RIPOR3Q96MK2 946 aa2.5□□□□□ -2.01
VPS13A-206ENST00000376646 COLEC11Q9BWP8 271 aa2.5□□□□□ -2.01
VPS13A-206ENST00000376646 RBM38Q9H0Z9 239 aaKnown RBP2.5□□□□□ -2.01
VPS13A-206ENST00000376646 IL21RQ9HBE5 538 aa2.5□□□□□ -2.01
VPS13A-206ENST00000376646 SPAG4Q9NPE6 437 aa2.5□□□□□ -2.01
VPS13A-206ENST00000376646 PLCB1Q9NQ66 1216 aa2.5□□□□□ -2.01
VPS13A-206ENST00000376646 OBSCNQ5VST9 7968 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 DPPA5A6NC42 116 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 ALDOCP09972 364 aaKnown RBP2.49□□□□□ -2.01
VPS13A-206ENST00000376646 IDEP14735 1019 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 EEF1GP26641 437 aaKnown RBP2.49□□□□□ -2.01
VPS13A-206ENST00000376646 CDC25AP30304 524 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 DGKKQ5KSL6 1271 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 C1orf228Q6PIY5 440 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 LRIG3Q6UXM1 1119 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 TRAPPC11Q7Z392 1133 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 SMC5Q8IY18 1101 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 SMRP1Q8NCR6 262 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 OR52N4Q8NGI2 321 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 KIAA1191Q96A73 305 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 SGCZQ96LD1 299 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 NUDT22Q9BRQ3 303 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 HTATIP2Q9BUP3 242 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 MAGEH1Q9H213 219 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 SLCO5A1Q9H2Y9 848 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 MAP6D1Q9H9H5 199 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 FZD3Q9NPG1 666 aa2.49□□□□□ -2.01
VPS13A-206ENST00000376646 STARD7Q9NQZ5 370 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms