RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 THOP1P52888 689 aa14.05□□□□□ -0.16
USP49-201ENST00000373006 HDAC4P56524 1084 aa14.05□□□□□ -0.16
USP49-201ENST00000373006 CNTN2Q02246 1040 aa14.05□□□□□ -0.16
USP49-201ENST00000373006 FLOT2Q14254 428 aa14.05□□□□□ -0.16
USP49-201ENST00000373006 PDK1Q15118 436 aa14.05□□□□□ -0.16
USP49-201ENST00000373006 EEF1DP3Q658K8 133 aa14.05□□□□□ -0.16
USP49-201ENST00000373006 C1orf127Q8N9H9 656 aa14.05□□□□□ -0.16
USP49-201ENST00000373006 MRPL1Q9BYD6 325 aaKnown RBP14.05□□□□□ -0.16
USP49-201ENST00000373006 MAGED2Q9UNF1 606 aaPredicted RBP14.05□□□□□ -0.16
USP49-201ENST00000373006 COL11A2P13942 1736 aaPredicted RBP14.05□□□□□ -0.16
USP49-201ENST00000373006 ARID2Q68CP9 1835 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 STX16-NPEPL1H3BU86 382 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 AP1G1O43747 822 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 GRK2P25098 689 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 CDKL1Q00532 357 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 SLC9A4Q6AI14 798 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 ILDR2Q71H61 639 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 SNX32Q86XE0 403 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 CDHR1Q96JP9 859 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 DHX35Q9H5Z1 703 aaKnown RBP14.04□□□□□ -0.16
USP49-201ENST00000373006 INO80B-WBP1J3KQ70 363 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 NOP56O00567 594 aaKnown RBP14.04□□□□□ -0.16
USP49-201ENST00000373006 STAMBPO95630 424 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 NELFEP18615 380 aaKnown RBP14.04□□□□□ -0.16
USP49-201ENST00000373006 CYP3A5P20815 502 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 MAGEA6P43360 314 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 CCR10P46092 362 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 ADARP55265 1226 aaKnown RBP14.04□□□□□ -0.16
USP49-201ENST00000373006 MS4A2Q01362 244 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 OLIG2Q13516 323 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 PDK2Q15119 407 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 BOLA3Q53S33 107 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 LILRA2Q8N149 483 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 CDKL2Q92772 493 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 PCYT2Q99447 389 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 B3GNT5Q9BYG0 378 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 INO80BQ9C086 356 aaPredicted RBP14.04□□□□□ -0.16
USP49-201ENST00000373006 EPB41L1Q9H4G0 881 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 TXNDC16Q9P2K2 825 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 PGAP2Q9UHJ9 254 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 CILPO75339 1184 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 HMGCS2P54868 508 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 SH3BGRP55822 239 aaPredicted RBP14.04□□□□□ -0.16
USP49-201ENST00000373006 HPCAP84074 193 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 LAMTOR4Q0VGL1 99 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 DLG2Q15700 870 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 FSCBQ5H9T9 825 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 FAM156AQ8NDB6 213 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 GMLQ99445 158 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 LGMNQ99538 433 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 Q9H521 79 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 CAB39LQ9H9S4 337 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 TSPAN16Q9UKR8 245 aa14.04□□□□□ -0.16
USP49-201ENST00000373006 CDK4P11802 303 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 ENO3P13929 434 aaPredicted RBP14.03□□□□□ -0.16
USP49-201ENST00000373006 EPHA3P29320 983 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 PGGT1BP53609 377 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 GRM1Q13255 1194 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 CYTH1Q15438 398 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 RARS2Q5T160 578 aaKnown RBP14.03□□□□□ -0.16
USP49-201ENST00000373006 HEATR6Q6AI08 1181 aaKnown RBP14.03□□□□□ -0.16
USP49-201ENST00000373006 EPGNQ6UW88 154 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 AMIGO2Q86SJ2 522 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 MARK4Q96L34 752 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 RTKNQ9BST9 563 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 BCO2Q9BYV7 579 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 SENP6Q9GZR1 1112 aaPredicted RBP14.03□□□□□ -0.16
USP49-201ENST00000373006 LIN28AQ9H9Z2 209 aaKnown RBP14.03□□□□□ -0.16
USP49-201ENST00000373006 C6orf203Q9P0P8 240 aaPredicted RBP14.03□□□□□ -0.16
USP49-201ENST00000373006 STK39Q9UEW8 545 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 RGPD3A6NKT7 1758 aaPredicted RBP14.03□□□□□ -0.16
USP49-201ENST00000373006 RGPD4Q7Z3J3 1758 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 RBM47A0AV96 593 aaKnown RBP14.03□□□□□ -0.16
USP49-201ENST00000373006 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.03□□□□□ -0.16
USP49-201ENST00000373006 GCATO75600 419 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 ZBTB7AO95365 584 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 MYL4P12829 197 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 CNTFP26441 200 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 HARS2P49590 506 aaKnown RBP14.03□□□□□ -0.16
USP49-201ENST00000373006 NIPAL4Q0D2K0 466 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 DUS1LQ6P1R4 473 aaKnown RBP14.03□□□□□ -0.16
USP49-201ENST00000373006 LRRC8BQ6P9F7 803 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 CDKL3Q8IVW4 592 aaPredicted RBP14.03□□□□□ -0.16
USP49-201ENST00000373006 DSELQ8IZU8 1212 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 BHLHE22Q8NFJ8 381 aaPredicted RBP14.03□□□□□ -0.16
USP49-201ENST00000373006 PKP2Q99959 881 aa14.03□□□□□ -0.16
USP49-201ENST00000373006 NIFKQ9BYG3 293 aaKnown RBP14.03□□□□□ -0.16
USP49-201ENST00000373006 CHRNGP07510 517 aa14.02□□□□□ -0.16
USP49-201ENST00000373006 SDC4P31431 198 aa14.02□□□□□ -0.16
USP49-201ENST00000373006 SLC5A2P31639 672 aa14.02□□□□□ -0.16
USP49-201ENST00000373006 STAT5BP51692 787 aa14.02□□□□□ -0.16
USP49-201ENST00000373006 TMEM132BQ14DG7 1078 aa14.02□□□□□ -0.16
USP49-201ENST00000373006 NRF1Q16656 503 aa14.02□□□□□ -0.16
USP49-201ENST00000373006 TMEM259Q4ZIN3 620 aa14.02□□□□□ -0.16
USP49-201ENST00000373006 STXBP5Q5T5C0 1151 aa14.02□□□□□ -0.16
USP49-201ENST00000373006 POTEAQ6S8J7 498 aa14.02□□□□□ -0.16
USP49-201ENST00000373006 FAM83AQ86UY5 434 aa14.02□□□□□ -0.16
USP49-201ENST00000373006 TRIM50Q86XT4 487 aa14.02□□□□□ -0.16
USP49-201ENST00000373006 ACMSDQ8TDX5 336 aa14.02□□□□□ -0.16
USP49-201ENST00000373006 RBM38Q9H0Z9 239 aaKnown RBP14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms