RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 IDI2Q9BXS1 227 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 ZNF341Q9BYN7 854 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 FRMD8Q9BZ67 464 aaPredicted RBP6.96□□□□□ -1.29
VPS39-202ENST00000348544 NUF2Q9BZD4 464 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 FAM96AQ9H5X1 160 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 RSAD1Q9HA92 442 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 CISHQ9NSE2 258 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.96□□□□□ -1.29
VPS39-202ENST00000348544 MTMR10Q9NXD2 777 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 CDH7Q9ULB5 785 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 USP18Q9UMW8 372 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 MYRFQ9Y2G1 1151 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 PCDHB12Q9Y5F1 795 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 K7EPI3 171 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 PSMD12O00232 456 aaPredicted RBP6.96□□□□□ -1.3
VPS39-202ENST00000348544 MATN2O00339 956 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 E2F6O75461 281 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 BMP10O95393 424 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 STAMBPO95630 424 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 ASS1P00966 412 aaKnown RBP6.96□□□□□ -1.3
VPS39-202ENST00000348544 ERBB2P04626 1255 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 ENO3P13929 434 aaPredicted RBP6.96□□□□□ -1.3
VPS39-202ENST00000348544 TCN1P20061 433 aaPredicted RBP6.96□□□□□ -1.3
VPS39-202ENST00000348544 CDH6P55285 790 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 PSMC1P62191 440 aaKnown RBP6.96□□□□□ -1.3
VPS39-202ENST00000348544 TUBA4AP68366 448 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 CRADDP78560 199 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 CD300CQ08708 224 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 NIPAL4Q0D2K0 466 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 SPIDRQ14159 915 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 MAMDC4Q6UXC1 1216 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 XYLT1Q86Y38 959 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 TNS4Q8IZW8 715 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 PLD5Q8N7P1 536 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 MCUQ8NE86 351 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 TBC1D15Q8TC07 691 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 ACMSDQ8TDX5 336 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 LRTOMTQ8WZ04 291 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 DLG3Q92796 817 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 RMND5BQ96G75 393 aaPredicted RBP6.96□□□□□ -1.3
VPS39-202ENST00000348544 MASTLQ96GX5 879 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 CNDP1Q96KN2 507 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 CEP170P1Q96L14 293 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 TMEM79Q9BSE2 394 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 ZNF518BQ9C0D4 1074 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 PAIP1Q9H074 479 aaKnown RBP6.96□□□□□ -1.3
VPS39-202ENST00000348544 ZNF385DQ9H6B1 395 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 WDR41Q9HAD4 459 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 PRDM16Q9HAZ2 1276 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 TCF7L2Q9NQB0 619 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 PDLIM7Q9NR12 457 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 ACSS2Q9NR19 701 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 PCDHGC3Q9UN70 934 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 STYXL1Q9Y6J8 313 aa6.96□□□□□ -1.3
VPS39-202ENST00000348544 NRXN2Q9P2S2 1712 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 RGSL1A5PLK6 1076 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 TRIM64CA6NLI5 447 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 NEMP1O14524 444 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 HMGCRP04035 888 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 ME2P23368 584 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 IL4RP24394 825 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 CNTFP26441 200 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 MYL6P60660 151 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 VPS72Q15906 364 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 MTX3Q5HYI7 312 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 TMEM198Q66K66 360 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 SLC9A4Q6AI14 798 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 TRNP1Q6NT89 227 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 XKR5Q6UX68 686 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 SCARA5Q6ZMJ2 495 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 LYSMD3Q7Z3D4 306 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 PGAM4Q8N0Y7 254 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 PLD6Q8N2A8 252 aaKnown RBP6.95□□□□□ -1.3
VPS39-202ENST00000348544 CENPSQ8N2Z9 138 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 TANKQ92844 425 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 PLEKHA8Q96JA3 519 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 OSBPL11Q9BXB4 747 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 POLR3FQ9H1D9 316 aaPredicted RBP6.95□□□□□ -1.3
VPS39-202ENST00000348544 DEFB129Q9H1M3 183 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 ANLNQ9NQW6 1124 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 PNPLA3Q9NST1 481 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 TBC1D23Q9NUY8 699 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 DUS2Q9NX74 493 aaKnown RBP6.95□□□□□ -1.3
VPS39-202ENST00000348544 DCDC2Q9UHG0 476 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 A0A1W2PPW3 197 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 WDR27A2RRH5 827 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 H0YJX3 145 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 PIK3R2O00459 728 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 ALDH1A2O94788 518 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 VAPBO95292 243 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 ZBTB11O95625 1053 aaPredicted RBP6.95□□□□□ -1.3
VPS39-202ENST00000348544 HSPA4LO95757 839 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 C8BP07358 591 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 CHRNGP07510 517 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 F7P08709 466 aaPredicted RBP6.95□□□□□ -1.3
VPS39-202ENST00000348544 OCM2P0CE71 109 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 OCMP0CE72 109 aaPredicted RBP6.95□□□□□ -1.3
VPS39-202ENST00000348544 MPSTP25325 297 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 PPARGP37231 505 aaPredicted RBP6.95□□□□□ -1.3
VPS39-202ENST00000348544 CCR10P46092 362 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms