RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 FIBINQ8TAL6 211 aa16.4■□□□□ 0.22
CCDC28A-201ENST00000332797 HCN4Q9Y3Q4 1203 aa16.4■□□□□ 0.22
CCDC28A-201ENST00000332797 CHURC1-FNTBB4DL54 471 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 ATG13O75143 517 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 PABPC1P11940 636 aaKnown RBP16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 KIR2DL1P43626 348 aaPredicted RBP16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 CCR3P51677 355 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 MRPS21P82921 87 aaKnown RBP16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 SATB1Q01826 763 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 SCAPQ12770 1279 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 LMAN2Q12907 356 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 ANGPT1Q15389 498 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 FSCBQ5H9T9 825 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 DAB2IPQ5VWQ8 1189 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 EGFLAMQ63HQ2 1017 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 CHST9Q7L1S5 443 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 ZNF683Q8IZ20 524 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 CCDC33Q8N5R6 958 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 ALLCQ8N6M5 410 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 ARFGAP1Q8N6T3 406 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 WFIKKN2Q8TEU8 576 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 ACDQ96AP0 544 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 BAG1Q99933 345 aaPredicted RBP16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 MAGEB5Q9BZ81 275 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 CIPCQ9C0C6 399 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 OSBPL2Q9H1P3 480 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 C2orf42Q9NWW7 574 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 UVRAGQ9P2Y5 699 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 OR12D3Q9UGF7 316 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 PCSK1NQ9UHG2 260 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 IP6K2Q9UHH9 426 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 FZD10Q9ULW2 581 aa16.39■□□□□ 0.21
CCDC28A-201ENST00000332797 FAM72CH0Y354 149 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 LRCH4O75427 683 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 CNTN5O94779 1100 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 KLF8O95600 359 aaPredicted RBP16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 MIPP30301 263 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 MAGEA1P43355 309 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 CXCL12P48061 93 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 CDH4P55283 916 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 SPA17Q15506 151 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 C5orf22Q49AR2 442 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 ALFQ53S48 1182 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 FAM72AQ5TYM5 149 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 FAM72DQ6L9T8 149 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 FAM72BQ86X60 149 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 AHI1Q8N157 1196 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 PYROXD2Q8N2H3 581 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 IL17RCQ8NAC3 791 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 PRSS33Q8NF86 280 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 PEBP4Q96S96 227 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 PRRX2Q99811 253 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 POLR3BQ9NW08 1133 aaPredicted RBP16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 GPATCH2LQ9NWQ4 482 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 MPP6Q9NZW5 540 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 HCN2Q9UL51 889 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 STARD13Q9Y3M8 1113 aa16.38■□□□□ 0.21
CCDC28A-201ENST00000332797 IGLV3-10A0A075B6K4 115 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 DRGXA6NNA5 263 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 MYO1FO00160 1098 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 PRPSAP2O60256 369 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 CLDN11O75508 207 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 NDUFA10O95299 355 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 LCA5LO95447 670 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 CHRM1P11229 460 aaPredicted RBP16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 AIF1P55008 147 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 NRG1Q02297 640 aaPredicted RBP16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 ZNF177Q13360 481 aaPredicted RBP16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 PIGHQ14442 188 aaPredicted RBP16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 ACAP1Q15027 740 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 EIF4HQ15056 248 aaKnown RBP16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 FUT11Q495W5 492 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 TMEM215Q68D42 235 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 RWDD4Q6NW29 188 aaKnown RBP16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 TFAP2DQ7Z6R9 452 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 KIAA0907Q7Z7F0 614 aaPredicted RBP16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 TXNDC5Q8NBS9 432 aaKnown RBP16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 UCMAQ8WVF2 138 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 SORCS1Q8WY21 1168 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 LMLNQ96KR4 655 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 OSGEPQ9NPF4 335 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 PRMT8Q9NR22 394 aaPredicted RBP16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 ELOVL2Q9NXB9 296 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 KIAA1522Q9P206 1035 aaPredicted RBP16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 INTUQ9ULD6 942 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 AP4E1Q9UPM8 1137 aa16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 EPN1Q9Y6I3 576 aaPredicted RBP16.37■□□□□ 0.21
CCDC28A-201ENST00000332797 ATG2BQ96BY7 2078 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 EIF3CLB5ME19 914 aaKnown RBP16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 IPO7O95373 1038 aaKnown RBP16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 COL9A1P20849 921 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 PCK1P35558 622 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 CSKP41240 450 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 WASP42768 502 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 GSDMDP57764 484 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 CSTF1Q05048 431 aaKnown RBP16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 DMC1Q14565 340 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 MBLAC2Q68D91 279 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms