RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 ERP44Q9BS26 406 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 ADAMTS10Q9H324 1103 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 ARHGEF4Q9NR80 690 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 DMAC2Q9NW81 257 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 BCAP29Q9UHQ4 241 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 HBS1LQ9Y450 684 aaKnown RBP9.48□□□□□ -0.89
PTPRE-202ENST00000306042 A8MX80 341 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 RNF103O00237 685 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 C1RP00736 705 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 WASP42768 502 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 ZNF280BQ86YH2 543 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 DNAJB4Q9UDY4 337 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 TRIM16O95361 564 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 GLP2RO95838 553 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 EPHX1P07099 455 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 KDELR1P24390 212 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 GDI1P31150 447 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 CARSP49589 748 aaKnown RBP9.48□□□□□ -0.89
PTPRE-202ENST00000306042 CDH17Q12864 832 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 PTPN20Q4JDL3 420 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 DOK6Q6PKX4 331 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.48□□□□□ -0.89
PTPRE-202ENST00000306042 WDR75Q8IWA0 830 aaKnown RBP9.48□□□□□ -0.89
PTPRE-202ENST00000306042 ZSWIM2Q8NEG5 633 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 OSCP1Q8WVF1 389 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 CAPS2Q9BXY5 557 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 ARHGAP10A1A4S6 786 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 PDE2AO00408 941 aaPredicted RBP9.48□□□□□ -0.89
PTPRE-202ENST00000306042 ATG13O75143 517 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 GPR32O75388 356 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 HMOX2P30519 316 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 HSPA9P38646 679 aaKnown RBP9.48□□□□□ -0.89
PTPRE-202ENST00000306042 AIF1P55008 147 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 KIF19Q2TAC6 998 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 RFX8Q6ZV50 586 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 GLT6D1Q7Z4J2 308 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 GRASPQ7Z6J2 395 aaPredicted RBP9.48□□□□□ -0.89
PTPRE-202ENST00000306042 GSPT2Q8IYD1 628 aaKnown RBP9.48□□□□□ -0.89
PTPRE-202ENST00000306042 DQX1Q8TE96 717 aaKnown RBP9.48□□□□□ -0.89
PTPRE-202ENST00000306042 COG1Q8WTW3 980 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 CPXM1Q96SM3 734 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 MPP6Q9NZW5 540 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 LNPEPQ9UIQ6 1025 aa9.48□□□□□ -0.89
PTPRE-202ENST00000306042 IGKV6D-21A0A0A0MT36 114 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 EPHB6O15197 1021 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 ACSL4O60488 711 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 MTA2O94776 668 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 MAGEA4P43358 317 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 VCPP55072 806 aaKnown RBP9.47□□□□□ -0.89
PTPRE-202ENST00000306042 GPR17Q13304 367 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 CASP8Q14790 479 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 POU6F1Q14863 301 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 TBCCQ15814 346 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 ANKRD20A8PQ5CZ79 823 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 MTSS1LQ765P7 747 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 CHST9Q7L1S5 443 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 STRADAQ7RTN6 431 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 CACNA2D3Q8IZS8 1091 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 SNX31Q8N9S9 440 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 GLMNQ92990 594 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 NECTIN4Q96NY8 510 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 KCNF1Q9H3M0 494 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 SLC13A4Q9UKG4 626 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 TBC1D3DA0A087WVF3 549 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 TBC1D3IA0A087WXS9 549 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 TBC1D3EA0A087X179 549 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 TBC1D3KA0A087X1G2 549 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 TBC1D3FA6NER0 549 aaPredicted RBP9.47□□□□□ -0.89
PTPRE-202ENST00000306042 TBC1D3LB9A6J9 549 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 APOC4-APOC2K7ER74 178 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 APOC2P02655 101 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 TBC1D3HP0C7X1 549 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 AARSP49588 968 aaKnown RBP eCLIP9.47□□□□□ -0.89
PTPRE-202ENST00000306042 HIC1Q14526 733 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 TBC1D3GQ6DHY5 549 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 TBC1D3CQ6IPX1 549 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 PMF1Q6P1K2 205 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 AGMOQ6ZNB7 445 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 TRMT10CQ7L0Y3 403 aaKnown RBP9.47□□□□□ -0.89
PTPRE-202ENST00000306042 NLRP9Q7RTR0 991 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 TBC1D3Q8IZP1 549 aaPredicted RBP9.47□□□□□ -0.89
PTPRE-202ENST00000306042 SH3RF2Q8TEC5 729 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 NDRG1Q92597 394 aaKnown RBP9.47□□□□□ -0.89
PTPRE-202ENST00000306042 E2F7Q96AV8 911 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 FBXL18Q96ME1 805 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 SRPK1Q96SB4 655 aaKnown RBP9.47□□□□□ -0.89
PTPRE-202ENST00000306042 CYLDQ9NQC7 956 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 PCDHA3Q9Y5H8 950 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 CACNA1SQ13698 1873 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 SUPT3HB4E1H0 165 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 RAD51CO43502 376 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 SUPT3HO75486 399 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 FAM163BP0C2L3 166 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 DDX5P17844 614 aaKnown RBP9.47□□□□□ -0.89
PTPRE-202ENST00000306042 ERCC2P18074 760 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 DDX6P26196 483 aaKnown RBP eCLIP9.47□□□□□ -0.89
PTPRE-202ENST00000306042 HTR1BP28222 390 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 RPL7AP62424 266 aaKnown RBP9.47□□□□□ -0.89
PTPRE-202ENST00000306042 ZCWPW2Q504Y3 356 aa9.47□□□□□ -0.89
PTPRE-202ENST00000306042 TMCO4Q5TGY1 634 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms