RNA–Protein interactions for RNA: ENST00000299543.8

CTDP1-202, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CTDP1, Length 3,380 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-202ENST00000299543 SIKE1Q9BRV8 207 aa13.81□□□□□ -0.2
CTDP1-202ENST00000299543 NXF3Q9H4D5 531 aaKnown RBP13.81□□□□□ -0.2
CTDP1-202ENST00000299543 PRDM16Q9HAZ2 1276 aa13.81□□□□□ -0.2
CTDP1-202ENST00000299543 CDHR5Q9HBB8 845 aa13.81□□□□□ -0.2
CTDP1-202ENST00000299543 XAB2Q9HCS7 855 aaKnown RBP13.81□□□□□ -0.2
CTDP1-202ENST00000299543 NME7Q9Y5B8 376 aa13.81□□□□□ -0.2
CTDP1-202ENST00000299543 HMX2A2RU54 273 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 CLDN5O00501 218 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 BPGMP07738 259 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 C6orf222P0C671 652 aaPredicted RBP13.8□□□□□ -0.2
CTDP1-202ENST00000299543 RARBP10826 455 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 ATP6V1B1P15313 513 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 SULT1E1P49888 294 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 SLC9A4Q6AI14 798 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 ERO1BQ86YB8 467 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 SCUBE1Q8IWY4 988 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 ADGRF2Q8IZF7 708 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 DEFB106AQ8N104 65 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 DNAAF3Q8N9W5 541 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 SLC35F5Q8WV83 523 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 SLC35B4Q969S0 331 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 KCNK4Q9NYG8 393 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 KIAA1257Q9ULG3 409 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 PPME1Q9Y570 386 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 DOCK1Q14185 1865 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 SSC5DA1L4H1 1573 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 GOLGA8TH3BQL2 631 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 ZMPSTE24O75844 475 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 TMCC1O94876 653 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 PRKCHP24723 683 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 PSMB4P28070 264 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 HPCAP84074 193 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 ARHGAP1Q07960 439 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 INCA1Q0VD86 236 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 HSF5Q4G112 596 aaPredicted RBP13.8□□□□□ -0.2
CTDP1-202ENST00000299543 CMC1Q7Z7K0 106 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 TNS4Q8IZW8 715 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 CDKL2Q92772 493 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 ATP2A3Q93084 1043 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 ZNF670Q9BS34 389 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 PDP2Q9P2J9 529 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 ATP9BO43861 1147 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 LAMC2Q13753 1193 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 GRIK4Q16099 956 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 SH2D4BQ5SQS7 431 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 ST13P4Q8IZP2 240 aaPredicted RBP13.8□□□□□ -0.2
CTDP1-202ENST00000299543 BEST2Q8NFU1 509 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 MOCOSQ96EN8 888 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 BRD8Q9H0E9 1235 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 PNPOQ9NVS9 261 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 CACNG4Q9UBN1 327 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 PACSIN3Q9UKS6 424 aa13.8□□□□□ -0.2
CTDP1-202ENST00000299543 SCN1AP35498 2009 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 RNF103O00237 685 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 OCRLQ01968 901 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 ZNF534Q76KX8 674 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 TMEM110Q86TL2 294 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 TMPRSS6Q8IU80 811 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 MAN1C1Q9NR34 630 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.79□□□□□ -0.2
CTDP1-202ENST00000299543 UBP1Q9NZI7 540 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 APOBEC2Q9Y235 224 aaKnown RBP13.79□□□□□ -0.2
CTDP1-202ENST00000299543 HBS1LQ9Y450 684 aaKnown RBP13.79□□□□□ -0.2
CTDP1-202ENST00000299543 PCDHA11Q9Y5I1 949 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 A0A0G2JLL6 359 aaPredicted RBP13.79□□□□□ -0.2
CTDP1-202ENST00000299543 SDR42E2A6NKP2 422 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 PDLIM1O00151 329 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 MFSD11O43934 449 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 PENKP01210 267 aaPredicted RBP13.79□□□□□ -0.2
CTDP1-202ENST00000299543 ALOX15P16050 662 aaPredicted RBP13.79□□□□□ -0.2
CTDP1-202ENST00000299543 NDUFV1P49821 464 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 PGGT1BP53609 377 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 SNX16P57768 344 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 ADIGQ0VDE8 80 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 SLC44A4Q53GD3 710 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 CMPK2Q5EBM0 449 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 RIPOR1Q6ZS17 1223 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 RAPH1Q70E73 1250 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 MARK2Q7KZI7 788 aaKnown RBP13.79□□□□□ -0.2
CTDP1-202ENST00000299543 PRRT2Q7Z6L0 340 aaPredicted RBP13.79□□□□□ -0.2
CTDP1-202ENST00000299543 DPP9Q86TI2 863 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 RASSF3Q86WH2 238 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 PIP4K2CQ8TBX8 421 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 MTBPQ96DY7 904 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 HAPLN3Q96S86 360 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 MED10Q9BTT4 135 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 SLC4A5Q9BY07 1137 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 TLE6Q9H808 572 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 XPNPEP3Q9NQH7 507 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 KLHL8Q9P2G9 620 aaPredicted RBP13.79□□□□□ -0.2
CTDP1-202ENST00000299543 PCDHGB4Q9UN71 923 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 PCDHGB5Q9Y5G0 923 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 ASB14A6NK59 587 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 PDE5AO76074 875 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 RECQL4O94761 1208 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 C1QAP02745 245 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 SLC1A6P48664 564 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 CDK7P50613 346 aa13.79□□□□□ -0.2
CTDP1-202ENST00000299543 IFRD2Q12894 506 aaPredicted RBP13.79□□□□□ -0.2
CTDP1-202ENST00000299543 ITGA9Q13797 1035 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms