RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 XPNPEP3Q9NQH7 507 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 CNGB3Q9NQW8 809 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 TPP1O14773 563 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 IGHA2P01877 340 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 ERVK-10P10266 1014 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 KITP10721 976 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 RAB41Q5JT25 222 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 ALYREFQ86V81 257 aaKnown RBP20.61■□□□□ 0.89
VPS53-201ENST00000291074 FAM13CQ8NE31 585 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 MIPEPQ99797 713 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 RTP3Q9BQQ7 232 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 FBXW11Q9UKB1 542 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 MAGED2Q9UNF1 606 aaPredicted RBP20.61■□□□□ 0.89
VPS53-201ENST00000291074 MTO1Q9Y2Z2 717 aaKnown RBP20.61■□□□□ 0.89
VPS53-201ENST00000291074 HSF5Q4G112 596 aaPredicted RBP20.6■□□□□ 0.89
VPS53-201ENST00000291074 ARID3BQ8IVW6 561 aaPredicted RBP20.6■□□□□ 0.89
VPS53-201ENST00000291074 TMEM86AQ8N2M4 240 aa20.6■□□□□ 0.89
VPS53-201ENST00000291074 APBB2Q92870 758 aa20.6■□□□□ 0.89
VPS53-201ENST00000291074 MYLPFQ96A32 169 aa20.6■□□□□ 0.89
VPS53-201ENST00000291074 NTAN1Q96AB6 310 aa20.6■□□□□ 0.89
VPS53-201ENST00000291074 FERMT1Q9BQL6 677 aa20.6■□□□□ 0.89
VPS53-201ENST00000291074 SENP6Q9GZR1 1112 aaPredicted RBP20.6■□□□□ 0.89
VPS53-201ENST00000291074 SAR1AQ9NR31 198 aa20.6■□□□□ 0.89
VPS53-201ENST00000291074 IGSF9Q9P2J2 1179 aa20.6■□□□□ 0.89
VPS53-201ENST00000291074 POMCP01189 267 aa20.6■□□□□ 0.89
VPS53-201ENST00000291074 IL1BP01584 269 aa20.6■□□□□ 0.89
VPS53-201ENST00000291074 SPDYAQ5MJ70 313 aa20.6■□□□□ 0.89
VPS53-201ENST00000291074 SLC9A7Q96T83 725 aa20.6■□□□□ 0.89
VPS53-201ENST00000291074 MTG1Q9BT17 334 aaPredicted RBP20.6■□□□□ 0.89
VPS53-201ENST00000291074 ARMCX1Q9P291 453 aa20.6■□□□□ 0.89
VPS53-201ENST00000291074 E2F8A0AVK6 867 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 BPGMP07738 259 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 BRCC3P46736 316 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 OCRLQ01968 901 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 RASSF3Q86WH2 238 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 FCRL3Q96P31 734 aaPredicted RBP20.59■□□□□ 0.89
VPS53-201ENST00000291074 COLEC11Q9BWP8 271 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 PRDM16Q9HAZ2 1276 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 EMCNQ9ULC0 261 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 RPS6KL1Q9Y6S9 549 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 C9IYK1 514 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 DUSP11O75319 330 aaKnown RBP20.59■□□□□ 0.89
VPS53-201ENST00000291074 MYCNP04198 464 aaPredicted RBP20.59■□□□□ 0.89
VPS53-201ENST00000291074 GM2AP17900 193 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 PTPN4P29074 926 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 GJA9P57773 515 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 SCAPQ12770 1279 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 TIFABQ6ZNK6 161 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 CYS1Q717R9 158 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 CDKL2Q92772 493 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 SMARCD1Q96GM5 515 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 CDH9Q9ULB4 789 aa20.59■□□□□ 0.89
VPS53-201ENST00000291074 TDRD15B5MCY1 1934 aaKnown RBP20.58■□□□□ 0.89
VPS53-201ENST00000291074 ZBTB24O43167 697 aaPredicted RBP20.58■□□□□ 0.89
VPS53-201ENST00000291074 MGEA5O60502 916 aa20.58■□□□□ 0.89
VPS53-201ENST00000291074 ANP32DO95626 131 aa20.58■□□□□ 0.89
VPS53-201ENST00000291074 FAM163BP0C2L3 166 aa20.58■□□□□ 0.89
VPS53-201ENST00000291074 CCND1P24385 295 aa20.58■□□□□ 0.89
VPS53-201ENST00000291074 RASSF2P50749 326 aa20.58■□□□□ 0.89
VPS53-201ENST00000291074 ZBTB17Q13105 803 aa20.58■□□□□ 0.89
VPS53-201ENST00000291074 PDE1CQ14123 709 aaPredicted RBP20.58■□□□□ 0.89
VPS53-201ENST00000291074 UPP1Q16831 310 aa20.58■□□□□ 0.89
VPS53-201ENST00000291074 PTCD3Q96EY7 689 aaKnown RBP20.58■□□□□ 0.89
VPS53-201ENST00000291074 C7orf26Q96N11 449 aa20.58■□□□□ 0.89
VPS53-201ENST00000291074 MYCBPQ99417 103 aaPredicted RBP20.58■□□□□ 0.89
VPS53-201ENST00000291074 NMUR2Q9GZQ4 415 aa20.58■□□□□ 0.89
VPS53-201ENST00000291074 TKTL2Q9H0I9 626 aa20.58■□□□□ 0.89
VPS53-201ENST00000291074 LNPEPQ9UIQ6 1025 aa20.58■□□□□ 0.89
VPS53-201ENST00000291074 FCHO1O14526 889 aa20.58■□□□□ 0.88
VPS53-201ENST00000291074 TRAFD1O14545 582 aaPredicted RBP20.58■□□□□ 0.88
VPS53-201ENST00000291074 BDNFP23560 247 aa20.58■□□□□ 0.88
VPS53-201ENST00000291074 ATG16L1Q676U5 607 aa20.58■□□□□ 0.88
VPS53-201ENST00000291074 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.58■□□□□ 0.88
VPS53-201ENST00000291074 SOCS4Q8WXH5 440 aa20.58■□□□□ 0.88
VPS53-201ENST00000291074 TMEM209Q96SK2 561 aa20.58■□□□□ 0.88
VPS53-201ENST00000291074 APOL2Q9BQE5 337 aa20.58■□□□□ 0.88
VPS53-201ENST00000291074 TMLHEQ9NVH6 421 aa20.58■□□□□ 0.88
VPS53-201ENST00000291074 DNAJC6O75061 913 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 CAPN15O75808 1086 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 GSRP00390 522 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 ITGA2BP08514 1039 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 CD52P31358 61 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 CD68P34810 354 aaPredicted RBP20.57■□□□□ 0.88
VPS53-201ENST00000291074 RPL10AP62906 217 aaKnown RBP20.57■□□□□ 0.88
VPS53-201ENST00000291074 PPM1JQ5JR12 505 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 N4BP2L1Q5TBK1 243 aaPredicted RBP20.57■□□□□ 0.88
VPS53-201ENST00000291074 TAC4Q86UU9 113 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 TRIM42Q8IWZ5 723 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 ATXN7L3BQ96GX2 97 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 CELF6Q96J87 481 aaKnown RBP20.57■□□□□ 0.88
VPS53-201ENST00000291074 ZFATQ9P243 1243 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 NKX1-2Q9UD57 310 aaPredicted RBP20.57■□□□□ 0.88
VPS53-201ENST00000291074 PTCH2Q9Y6C5 1203 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 MRPL42Q9Y6G3 142 aaKnown RBP20.57■□□□□ 0.88
VPS53-201ENST00000291074 MANSC4A6NHS7 340 aaPredicted RBP20.57■□□□□ 0.88
VPS53-201ENST00000291074 CNTFP26441 200 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 PPIDQ08752 370 aaKnown RBP20.57■□□□□ 0.88
VPS53-201ENST00000291074 RSPH3Q86UC2 560 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 IFNL1Q8IU54 200 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 CERS2Q96G23 380 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms