RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 NXF1Q9UBU9 619 aaKnown RBP8.95□□□□□ -0.98
TTC28-208ENST00000612946 SEC14L4Q9UDX3 406 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 A0A087X1B8 175 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 PRPF4O43172 522 aaKnown RBP eCLIP8.95□□□□□ -0.98
TTC28-208ENST00000612946 CYP2C8P10632 490 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 ZNF394Q53GI3 561 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 COPS7BQ9H9Q2 264 aaPredicted RBP8.95□□□□□ -0.98
TTC28-208ENST00000612946 ASLP04424 464 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 CHRM1P11229 460 aaPredicted RBP8.95□□□□□ -0.98
TTC28-208ENST00000612946 BGNP21810 368 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 ZNF235Q14590 738 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 MRNIPQ6NTE8 343 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 ZNF276Q8N554 614 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 FEZF2Q8TBJ5 459 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 BTN2A2Q8WVV5 523 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 ZNF594Q96JF6 807 aaPredicted RBP8.95□□□□□ -0.98
TTC28-208ENST00000612946 DHX35Q9H5Z1 703 aaKnown RBP8.95□□□□□ -0.98
TTC28-208ENST00000612946 CATSPERBQ9H7T0 1116 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 PCDH12Q9NPG4 1184 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 CFL2Q9Y281 166 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 FLT1P17948 1338 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 DHRS12A0PJE2 317 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 NCAM1P13591 858 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 ZNF829Q3KNS6 432 aaPredicted RBP8.95□□□□□ -0.98
TTC28-208ENST00000612946 INTS11Q5TA45 600 aaKnown RBP8.95□□□□□ -0.98
TTC28-208ENST00000612946 TTC7BQ86TV6 843 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 SLC22A4Q9H015 551 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 CD274Q9NZQ7 290 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 LNPEPQ9UIQ6 1025 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 ACOT9Q9Y305 439 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 PROCP04070 461 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 PAICSP22234 425 aaKnown RBP8.95□□□□□ -0.98
TTC28-208ENST00000612946 ELP6Q0PNE2 266 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 MPP3Q13368 585 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 PPP1R15BQ5SWA1 713 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 SLITRK4Q8IW52 837 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 GJD3Q8N144 294 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 CIDECQ96AQ7 238 aaPredicted RBP8.95□□□□□ -0.98
TTC28-208ENST00000612946 MRPL4Q9BYD3 311 aaKnown RBP8.95□□□□□ -0.98
TTC28-208ENST00000612946 IL1RL2Q9HB29 575 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 LOXHD1Q8IVV2 1947 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 ERCC2P18074 760 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 CCNA1P78396 465 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 GALNT18Q6P9A2 607 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 CREB3L1Q96BA8 519 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 HPSEQ9Y251 543 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 ZNF879B4DU55 563 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 FLT3P36888 993 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 PTGER2P43116 358 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 GTF2IP78347 998 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 CDC42EP1Q00587 391 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 SPANXN3Q5MJ09 141 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 ANKRD26P1Q6NSI1 321 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 SMIM5Q71RC9 77 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 TCP10LQ8TDR4 215 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 HTATIP2Q9BUP3 242 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 THRAP3Q9Y2W1 955 aaKnown RBP8.95□□□□□ -0.98
TTC28-208ENST00000612946 VPS26AO75436 327 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 HARS2P49590 506 aaKnown RBP8.95□□□□□ -0.98
TTC28-208ENST00000612946 GNA13Q14344 377 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 FAM187BQ17R55 369 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 USP43Q70EL4 1123 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 EMC1Q8N766 993 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 GSDMCQ9BYG8 508 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 MAGEL2Q9UJ55 1249 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 MFHAS1Q9Y4C4 1052 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 UBXN8O00124 270 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 MRASO14807 208 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 SERPINF2P08697 491 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 RBP3P10745 1247 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 PTX3P26022 381 aaPredicted RBP8.95□□□□□ -0.98
TTC28-208ENST00000612946 ZBED5Q49AG3 693 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 RNF135Q8IUD6 432 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 SVOPLQ8N434 492 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 PHF20Q9BVI0 1012 aa8.95□□□□□ -0.98
TTC28-208ENST00000612946 TDRKHQ9Y2W6 561 aaKnown RBP8.95□□□□□ -0.98
TTC28-208ENST00000612946 CHST10O43529 356 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 TPST1O60507 370 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 NR3C2P08235 984 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 NFIAQ12857 509 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 HKDC1Q2TB90 917 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 ACSBG1Q96GR2 724 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 MCEEQ96PE7 176 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 MMTAG2Q9BU76 263 aaKnown RBP8.94□□□□□ -0.98
TTC28-208ENST00000612946 MTF2Q9Y483 593 aaPredicted RBP8.94□□□□□ -0.98
TTC28-208ENST00000612946 CAPN6Q9Y6Q1 641 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 ZNF682O95780 498 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 MRPS22P82650 360 aaKnown RBP8.94□□□□□ -0.98
TTC28-208ENST00000612946 C1QBPQ07021 282 aaKnown RBP8.94□□□□□ -0.98
TTC28-208ENST00000612946 RNF220Q5VTB9 566 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 TNIP3Q96KP6 325 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 TUBA1CQ9BQE3 449 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 DGCR6LQ9BY27 220 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 ZCWPW1Q9H0M4 648 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 TRMT13Q9NUP7 481 aaKnown RBP8.94□□□□□ -0.98
TTC28-208ENST00000612946 TULP3O75386 442 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 LDOC1O95751 146 aaPredicted RBP8.94□□□□□ -0.98
TTC28-208ENST00000612946 BNIP1Q12981 228 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 OR8H1Q8NGG4 311 aa8.94□□□□□ -0.98
TTC28-208ENST00000612946 EEF1AKMT1Q8WVE0 214 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms