RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 FZD4Q9ULV1 537 aa10.57□□□□□ -0.72
TRIM28-210ENST00000597618 MYH10P35580 1976 aa10.57□□□□□ -0.72
TRIM28-210ENST00000597618 COL12A1Q99715 3063 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 A0A1W2PR77 199 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 TLR4O00206 839 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 RNASEH2AO75792 299 aaKnown RBP10.56□□□□□ -0.72
TRIM28-210ENST00000597618 LATS1O95835 1130 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 POLR2EP19388 210 aaKnown RBP10.56□□□□□ -0.72
TRIM28-210ENST00000597618 PDCP20941 246 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 ACP1P24666 158 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 PIK3CAP42336 1068 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 CCR5P51681 352 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 E2F1Q01094 437 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 EHHADHQ08426 723 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 SLC39A14Q15043 492 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 E2F4Q16254 413 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 ARHGAP40Q5TG30 622 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 SPOPLQ6IQ16 392 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 UNC13DQ70J99 1090 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 ZC3H3Q8IXZ2 948 aaKnown RBP10.56□□□□□ -0.72
TRIM28-210ENST00000597618 LSMEM2Q8N112 164 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 ZNF557Q8N988 423 aaPredicted RBP10.56□□□□□ -0.72
TRIM28-210ENST00000597618 TMA16Q96EY4 203 aaKnown RBP10.56□□□□□ -0.72
TRIM28-210ENST00000597618 HIC2Q96JB3 615 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 SERAC1Q96JX3 654 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 OMDQ99983 421 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 IMPG2Q9BZV3 1241 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 EBF2Q9HAK2 575 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 CYP3A43Q9HB55 503 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 OLA1Q9NTK5 396 aaKnown RBP10.56□□□□□ -0.72
TRIM28-210ENST00000597618 SERGEFQ9UGK8 458 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 STOML2Q9UJZ1 356 aa10.56□□□□□ -0.72
TRIM28-210ENST00000597618 BOD1L1Q8NFC6 3051 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 A0A1W2PP55 124 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 WISP1O95388 367 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 CD2BP2O95400 341 aaKnown RBP10.55□□□□□ -0.72
TRIM28-210ENST00000597618 MT-CO3P00414 261 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 SLFN14P0C7P3 912 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 ST8SIA6P61647 398 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 DLG4P78352 724 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 KCNJ12Q14500 433 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 CST6Q15828 149 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 HNRNPA1L2Q32P51 320 aaKnown RBP10.55□□□□□ -0.72
TRIM28-210ENST00000597618 PROX2Q3B8N5 592 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 MPP7Q5T2T1 576 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 ADGRF1Q5T601 910 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 PPP1R26Q5T8A7 1209 aaPredicted RBP10.55□□□□□ -0.72
TRIM28-210ENST00000597618 KDM7AQ6ZMT4 941 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 SV2AQ7L0J3 742 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 DHX40Q8IX18 779 aaKnown RBP10.55□□□□□ -0.72
TRIM28-210ENST00000597618 IQUBQ8NA54 791 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 KCNE4Q8WWG9 221 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 DHX58Q96C10 678 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 NAF1Q96HR8 494 aaKnown RBP10.55□□□□□ -0.72
TRIM28-210ENST00000597618 C7orf25Q9BPX7 421 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 BACH2Q9BYV9 841 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 UBXN6Q9BZV1 441 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 SEMA4CQ9C0C4 833 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 NEUROG2Q9H2A3 272 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 CPNE5Q9HCH3 593 aa10.55□□□□□ -0.72
TRIM28-210ENST00000597618 HBS1LQ9Y450 684 aaKnown RBP10.55□□□□□ -0.72
TRIM28-210ENST00000597618 UBR5O95071 2799 aaPredicted RBP10.54□□□□□ -0.72
TRIM28-210ENST00000597618 C10orf142B7Z368 130 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 WNT9AO14904 365 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 IKBKBO14920 756 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 MID1O15344 667 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 SLC28A2O43868 658 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 MAGEC1O60732 1142 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 PLXNA2O75051 1894 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 SIN3BO75182 1162 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 DXOO77932 396 aaKnown RBP10.54□□□□□ -0.72
TRIM28-210ENST00000597618 HLA-DRAP01903 254 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 ASLP04424 464 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 NEFLP07196 543 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 CD58P19256 250 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 CD70P32970 193 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 SLC8A3P57103 927 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 ERVPABLB-1P60509 514 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 BNIP3Q12983 259 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 LY6DQ14210 128 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 ARID5BQ14865 1188 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 RAB41Q5JT25 222 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 NAPEPLDQ6IQ20 393 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 FAM173BQ6P4H8 233 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 SND1Q7KZF4 910 aaKnown RBP eCLIP10.54□□□□□ -0.72
TRIM28-210ENST00000597618 KANSL1Q7Z3B3 1105 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 PIGZQ86VD9 579 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 IQCHQ86VS3 1027 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 SLC9A9Q8IVB4 645 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 MMAAQ8IVH4 418 aaKnown RBP10.54□□□□□ -0.72
TRIM28-210ENST00000597618 KDM1BQ8NB78 822 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 TMC2Q8TDI7 906 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 TMEM174Q8WUU8 243 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 SNRNP27Q8WVK2 155 aaKnown RBP10.54□□□□□ -0.72
TRIM28-210ENST00000597618 TTC9Q92623 222 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 TTC17Q96AE7 1141 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 MED8Q96G25 268 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 IRX2Q9BZI1 471 aaPredicted RBP10.54□□□□□ -0.72
TRIM28-210ENST00000597618 NIF3L1Q9GZT8 377 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 MTG2Q9H4K7 406 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms