RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 RNASEH1O60930 286 aaKnown RBP13.28□□□□□ -0.28
SS18-219ENST00000581570 HLA-DRAP01903 254 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 CD58P19256 250 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 PDCP20941 246 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 PIK3CAP42336 1068 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 ZNF445P59923 1031 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 INSM1Q01101 510 aaPredicted RBP13.28□□□□□ -0.28
SS18-219ENST00000581570 SLC45A4Q5BKX6 768 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 BROXQ5VW32 411 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 FMNL3Q8IVF7 1028 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 IQUBQ8NA54 791 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 ZNF248Q8NDW4 579 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 OR2T34Q8NGX1 318 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 RFFLQ8WZ73 363 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 DNAI2Q9GZS0 605 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 NEUROG2Q9H2A3 272 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 DMAC2Q9NW81 257 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 SERGEFQ9UGK8 458 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 B8ZZF3 427 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 TLR4O00206 839 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 IKBKBO14920 756 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 MID1O15344 667 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 ARHGAP6O43182 974 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 RNASEH2AO75792 299 aaKnown RBP13.27□□□□□ -0.29
SS18-219ENST00000581570 CASP1P29466 404 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 RXRGP48443 463 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 CCR5P51681 352 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 UCNP55089 124 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 NXPH1P58417 271 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 ST8SIA6P61647 398 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 KCNC4Q03721 635 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 KCNJ12Q14500 433 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 PKDCCQ504Y2 493 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 ZNF394Q53GI3 561 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 ADGRF1Q5T601 910 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 ARHGAP40Q5TG30 622 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 SFMBT2Q5VUG0 894 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 KDM7AQ6ZMT4 941 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 OXR1Q8N573 874 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 DCBLD1Q8N8Z6 715 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 FAM181AQ8N9Y4 354 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 TMC2Q8TDI7 906 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 SERAC1Q96JX3 654 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 HEXIM2Q96MH2 286 aaKnown RBP13.27□□□□□ -0.29
SS18-219ENST00000581570 OMDQ99983 421 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 UBXN6Q9BZV1 441 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 IMPG2Q9BZV3 1241 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 SEMA4CQ9C0C4 833 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 BLZF1Q9H2G9 400 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 ERVMER34-1Q9H9K5 563 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 APOBEC3GQ9HC16 384 aaKnown RBP13.27□□□□□ -0.29
SS18-219ENST00000581570 OLA1Q9NTK5 396 aaKnown RBP13.27□□□□□ -0.29
SS18-219ENST00000581570 ADAMTS1Q9UHI8 967 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 STOML2Q9UJZ1 356 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 HBS1LQ9Y450 684 aaKnown RBP13.27□□□□□ -0.29
SS18-219ENST00000581570 PTPRQQ9UMZ3 2332 aa13.27□□□□□ -0.29
SS18-219ENST00000581570 PYCARD-AS1I3L0S3 204 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 SIN3BO75182 1162 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 MT-CO3P00414 261 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 SLFN14P0C7P3 912 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 ACP1P24666 158 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 CD70P32970 193 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 PCBP4P57723 403 aaKnown RBP13.26□□□□□ -0.29
SS18-219ENST00000581570 TMPRSS3P57727 454 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 E2F1Q01094 437 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 STK38Q15208 465 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 CST6Q15828 149 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 RAB41Q5JT25 222 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 PIGZQ86VD9 579 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 SLC9A9Q8IVB4 645 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 DHX40Q8IX18 779 aaKnown RBP13.26□□□□□ -0.29
SS18-219ENST00000581570 WFDC5Q8TCV5 224 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 ZNF462Q96JM2 2506 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 ZNF578Q96N58 590 aaPredicted RBP13.26□□□□□ -0.29
SS18-219ENST00000581570 BACH2Q9BYV9 841 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 CPNE5Q9HCH3 593 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 SFMBT1Q9UHJ3 866 aa13.26□□□□□ -0.29
SS18-219ENST00000581570 PVALEFA0A1B0GWK0 134 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 TBL1XO60907 577 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 LATS1O95835 1130 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 ZBED1O96006 694 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 C6P13671 934 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 SLC8A1P32418 973 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 NASPP49321 788 aaPredicted RBP13.25□□□□□ -0.29
SS18-219ENST00000581570 SGSHP51688 502 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 TKTL1P51854 596 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 LY6DQ14210 128 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 HNRNPA1L2Q32P51 320 aaKnown RBP13.25□□□□□ -0.29
SS18-219ENST00000581570 C8orf34Q49A92 452 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 C1orf220Q5T0J3 134 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 PM20D1Q6GTS8 502 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 KANSL1Q7Z3B3 1105 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 MMAAQ8IVH4 418 aaKnown RBP13.25□□□□□ -0.29
SS18-219ENST00000581570 OR14C36Q8NHC7 312 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 RNF139Q8WU17 664 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 NDRG1Q92597 394 aaKnown RBP13.25□□□□□ -0.29
SS18-219ENST00000581570 TTC17Q96AE7 1141 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 MYO19Q96H55 970 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 ULBP1Q9BZM6 244 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 NIF3L1Q9GZT8 377 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms