RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 ASTN2O75129 1339 aaPredicted RBP15.7■□□□□ 0.1
CIITA-204ENST00000570546 A0A1W2PPM1 405 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 USP12O75317 370 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 MAFO75444 373 aaPredicted RBP15.7■□□□□ 0.1
CIITA-204ENST00000570546 PIAS1O75925 651 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 ALDH1A1P00352 501 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 RTP1P59025 263 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 ZNF470Q6ECI4 717 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 PKN3Q6P5Z2 889 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 DNAJB3Q8WWF6 145 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 OPTNQ96CV9 577 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 TRAPPC9Q96Q05 1148 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 SH3BP1Q9Y3L3 701 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 TULP2O00295 520 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 TBC1D12O60347 775 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 FCGR1AP12314 374 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 ME2P23368 584 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 PSMB4P28070 264 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 LRRC74AQ0VAA2 488 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 TTLL9Q3SXZ7 439 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 PIWIL2Q8TC59 973 aaKnown RBP15.7■□□□□ 0.1
CIITA-204ENST00000570546 SNRNP25Q9BV90 132 aaKnown RBP15.7■□□□□ 0.1
CIITA-204ENST00000570546 PRKD2Q9BZL6 878 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 SORCS3Q9UPU3 1222 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 TNFSF13BQ9Y275 285 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 PCDHB7Q9Y5E2 793 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 XRN1Q8IZH2 1706 aaKnown RBP15.69■□□□□ 0.1
CIITA-204ENST00000570546 SYNDIG1LA6NDD5 238 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 PLA2G6O60733 806 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 ENTPD5O75356 428 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 YBX3P16989 372 aaKnown RBP eCLIP15.69■□□□□ 0.1
CIITA-204ENST00000570546 CLK1P49759 484 aaKnown RBP15.69■□□□□ 0.1
CIITA-204ENST00000570546 CRADDP78560 199 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 ATP6AP1LQ52LC2 224 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 MFSD5Q6N075 450 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 P3H2Q8IVL5 708 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 RNF148Q8N7C7 305 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 RAET1EQ8TD07 263 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 POMKQ9H5K3 350 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 PRDM16Q9HAZ2 1276 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 POPDC2Q9HBU9 364 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 TMEM161AQ9NX61 479 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 FZD1Q9UP38 647 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 DCDC2CA8MYV0 355 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 BAIAP3O94812 1187 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 ZC3H12BQ5HYM0 836 aaKnown RBP15.69■□□□□ 0.1
CIITA-204ENST00000570546 RIPOR1Q6ZS17 1223 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 OTOAQ7RTW8 1153 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 TMC7Q7Z402 723 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 DDX53Q86TM3 631 aaKnown RBP15.69■□□□□ 0.1
CIITA-204ENST00000570546 SNRNP27Q8WVK2 155 aaKnown RBP15.69■□□□□ 0.1
CIITA-204ENST00000570546 DDX28Q9NUL7 540 aaKnown RBP15.69■□□□□ 0.1
CIITA-204ENST00000570546 KCNH4Q9UQ05 1017 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 TCRBV7S2A1N4TA0A589 114 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 CFAP99D6REC4 459 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 UPP2O95045 317 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 MARC1Q5VT66 337 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 CATSPERGQ6ZRH7 1159 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 DHFR2Q86XF0 187 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 HS6ST3Q8IZP7 471 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 VPS37AQ8NEZ2 397 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 SMARCD1Q96GM5 515 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 SLC12A8A0AV02 714 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 EDF1O60869 148 aaKnown RBP15.69■□□□□ 0.1
CIITA-204ENST00000570546 SMNDC1O75940 238 aaKnown RBP eCLIP15.69■□□□□ 0.1
CIITA-204ENST00000570546 RGS2P41220 211 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 RPL14P50914 215 aaKnown RBP15.69■□□□□ 0.1
CIITA-204ENST00000570546 BST1Q10588 318 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 FAM84AQ96KN4 292 aa15.69■□□□□ 0.1
CIITA-204ENST00000570546 TCHHQ07283 1943 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 SPEF2Q9C093 1822 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 ADAMTS3O15072 1205 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 NPM3O75607 178 aaKnown RBP15.68■□□□□ 0.1
CIITA-204ENST00000570546 ASMTLO95671 621 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 ALDH1A3P47895 512 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 CLK2P49760 499 aaKnown RBP15.68■□□□□ 0.1
CIITA-204ENST00000570546 CDH18Q13634 790 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 CELF3Q5SZQ8 465 aaKnown RBP15.68■□□□□ 0.1
CIITA-204ENST00000570546 DDHD1Q8NEL9 900 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 R3HDM2Q9Y2K5 976 aaKnown RBP15.68■□□□□ 0.1
CIITA-204ENST00000570546 ARHGEF9O43307 516 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 KRT36O76013 467 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 TM4SF1P30408 202 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 ATP6V1E1P36543 226 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 NUP107P57740 925 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 LLGL2Q6P1M3 1020 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 PRMT9Q6P2P2 845 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 ILDR2Q71H61 639 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 PATL1Q86TB9 770 aaKnown RBP15.68■□□□□ 0.1
CIITA-204ENST00000570546 MYO1HQ8N1T3 1032 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 RAB42Q8N4Z0 105 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 TERB1Q8NA31 727 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 OTUB1Q96FW1 271 aaPredicted RBP15.68■□□□□ 0.1
CIITA-204ENST00000570546 RAD54BQ9Y620 910 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 ERI2A8K979 691 aaKnown RBP15.68■□□□□ 0.1
CIITA-204ENST00000570546 MRASO14807 208 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 TNFAIP8O95379 198 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 AXLP30530 894 aa15.68■□□□□ 0.1
CIITA-204ENST00000570546 SKIV2L2P42285 1042 aaKnown RBP15.68■□□□□ 0.1
CIITA-204ENST00000570546 SLC25A3Q00325 362 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms