RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 EHHADHQ08426 723 aa16.88■□□□□ 0.29
CLK3-223ENST00000568488 PDE4CQ08493 712 aa16.88■□□□□ 0.29
CLK3-223ENST00000568488 SGSM1Q2NKQ1 1148 aa16.88■□□□□ 0.29
CLK3-223ENST00000568488 PROX2Q3B8N5 592 aa16.88■□□□□ 0.29
CLK3-223ENST00000568488 COLEC12Q5KU26 742 aa16.88■□□□□ 0.29
CLK3-223ENST00000568488 BRAPQ7Z569 592 aa16.88■□□□□ 0.29
CLK3-223ENST00000568488 ZC3H3Q8IXZ2 948 aaKnown RBP16.88■□□□□ 0.29
CLK3-223ENST00000568488 PDILTQ8N807 584 aa16.88■□□□□ 0.29
CLK3-223ENST00000568488 ERVMER34-1Q9H9K5 563 aa16.88■□□□□ 0.29
CLK3-223ENST00000568488 TRIM38O00635 465 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 EIF3DO15371 548 aaKnown RBP eCLIP16.87■□□□□ 0.29
CLK3-223ENST00000568488 EXOC3O60645 756 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 SIN3BO75182 1162 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 VNN1O95497 513 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 C4BPAP04003 597 aaKnown RBP16.87■□□□□ 0.29
CLK3-223ENST00000568488 HARS2P49590 506 aaKnown RBP16.87■□□□□ 0.29
CLK3-223ENST00000568488 AP3M2P53677 418 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 ERVPABLB-1P60509 514 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 ST8SIA6P61647 398 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 CEBPZQ03701 1054 aaKnown RBP16.87■□□□□ 0.29
CLK3-223ENST00000568488 NFATC3Q12968 1075 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 CST6Q15828 149 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 SPOPLQ6IQ16 392 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 KANSL1Q7Z3B3 1105 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 SPATS2Q86XZ4 545 aaKnown RBP16.87■□□□□ 0.29
CLK3-223ENST00000568488 MMAAQ8IVH4 418 aaKnown RBP16.87■□□□□ 0.29
CLK3-223ENST00000568488 FAM217AQ8IXS0 508 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 OR14C36Q8NHC7 312 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 PLEKHO2Q8TD55 490 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 PLD4Q96BZ4 506 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 VCPIP1Q96JH7 1222 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 DEPDC7Q96QD5 511 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 TWNKQ96RR1 684 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 USP3Q9Y6I4 520 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 COL12A1Q99715 3063 aa16.87■□□□□ 0.29
CLK3-223ENST00000568488 TBC1D3DA0A087WVF3 549 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 TBC1D3IA0A087WXS9 549 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 A0A087X0B3 334 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 TBC1D3EA0A087X179 549 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 TBC1D3KA0A087X1G2 549 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 TBC1D3FA6NER0 549 aaPredicted RBP16.86■□□□□ 0.29
CLK3-223ENST00000568488 LRRIQ3A6PVS8 624 aaPredicted RBP16.86■□□□□ 0.29
CLK3-223ENST00000568488 TBC1D3LB9A6J9 549 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 TBC1D3HP0C7X1 549 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 SLC8A1P32418 973 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 LSSP48449 732 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 CCR5P51681 352 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 HS1BP3Q53T59 392 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 TBC1D3GQ6DHY5 549 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 TBC1D3CQ6IPX1 549 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 EPM2AIP1Q7L775 607 aaPredicted RBP16.86■□□□□ 0.29
CLK3-223ENST00000568488 TMC6Q7Z403 805 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 TBC1D3Q8IZP1 549 aaPredicted RBP16.86■□□□□ 0.29
CLK3-223ENST00000568488 ARHGAP18Q8N392 663 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 OSBPL2Q9H1P3 480 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 POLR1BQ9H9Y6 1135 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 THSD1Q9NS62 852 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 SMC3Q9UQE7 1217 aa16.86■□□□□ 0.29
CLK3-223ENST00000568488 OPA1O60313 960 aa16.85■□□□□ 0.29
CLK3-223ENST00000568488 CSO75390 466 aaKnown RBP16.85■□□□□ 0.29
CLK3-223ENST00000568488 CD70P32970 193 aa16.85■□□□□ 0.29
CLK3-223ENST00000568488 YWHAGP61981 247 aaKnown RBP eCLIP16.85■□□□□ 0.29
CLK3-223ENST00000568488 ASIC1P78348 528 aa16.85■□□□□ 0.29
CLK3-223ENST00000568488 ZNF211Q13398 564 aaPredicted RBP16.85■□□□□ 0.29
CLK3-223ENST00000568488 TRIP4Q15650 581 aaPredicted RBP16.85■□□□□ 0.29
CLK3-223ENST00000568488 FAM26FQ5R3K3 315 aa16.85■□□□□ 0.29
CLK3-223ENST00000568488 C6orf132Q5T0Z8 1188 aa16.85■□□□□ 0.29
CLK3-223ENST00000568488 KIAA0907Q7Z7F0 614 aaPredicted RBP16.85■□□□□ 0.29
CLK3-223ENST00000568488 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.85■□□□□ 0.29
CLK3-223ENST00000568488 MFSD2AQ8NA29 543 aa16.85■□□□□ 0.29
CLK3-223ENST00000568488 PARD3BQ8TEW8 1205 aa16.85■□□□□ 0.29
CLK3-223ENST00000568488 SNRNP27Q8WVK2 155 aaKnown RBP16.85■□□□□ 0.29
CLK3-223ENST00000568488 NT5C1AQ9BXI3 368 aa16.85■□□□□ 0.29
CLK3-223ENST00000568488 DUSP16Q9BY84 665 aa16.85■□□□□ 0.29
CLK3-223ENST00000568488 WDR70Q9NW82 654 aa16.85■□□□□ 0.29
CLK3-223ENST00000568488 K7ENP7 123 aa16.84■□□□□ 0.29
CLK3-223ENST00000568488 MAGEC1O60732 1142 aa16.84■□□□□ 0.29
CLK3-223ENST00000568488 DXOO77932 396 aaKnown RBP16.84■□□□□ 0.29
CLK3-223ENST00000568488 RPN1P04843 607 aaKnown RBP16.84■□□□□ 0.29
CLK3-223ENST00000568488 ASPAP45381 313 aa16.84■□□□□ 0.29
CLK3-223ENST00000568488 PSMD8P48556 350 aa16.84■□□□□ 0.29
CLK3-223ENST00000568488 SGSHP51688 502 aa16.84■□□□□ 0.29
CLK3-223ENST00000568488 SNRPFP62306 86 aaKnown RBP16.84■□□□□ 0.29
CLK3-223ENST00000568488 HNRNPA1L2Q32P51 320 aaKnown RBP16.84■□□□□ 0.29
CLK3-223ENST00000568488 CDCP2Q5VXM1 449 aa16.84■□□□□ 0.29
CLK3-223ENST00000568488 NAPEPLDQ6IQ20 393 aa16.84■□□□□ 0.29
CLK3-223ENST00000568488 INO80CQ6PI98 192 aaPredicted RBP16.84■□□□□ 0.29
CLK3-223ENST00000568488 CCDC81Q6ZN84 652 aa16.84■□□□□ 0.29
CLK3-223ENST00000568488 SND1Q7KZF4 910 aaKnown RBP eCLIP16.84■□□□□ 0.29
CLK3-223ENST00000568488 PRPF39Q86UA1 669 aaKnown RBP16.84■□□□□ 0.29
CLK3-223ENST00000568488 TMX3Q96JJ7 454 aa16.84■□□□□ 0.29
CLK3-223ENST00000568488 LRRC27Q9C0I9 530 aa16.84■□□□□ 0.29
CLK3-223ENST00000568488 ABCG4Q9H172 646 aa16.84■□□□□ 0.29
CLK3-223ENST00000568488 FZD4Q9ULV1 537 aa16.84■□□□□ 0.29
CLK3-223ENST00000568488 ARID1BQ8NFD5 2236 aaPredicted RBP16.84■□□□□ 0.29
CLK3-223ENST00000568488 FFAR2O15552 330 aa16.83■□□□□ 0.28
CLK3-223ENST00000568488 TBL1XO60907 577 aa16.83■□□□□ 0.28
CLK3-223ENST00000568488 CD58P19256 250 aa16.83■□□□□ 0.28
CLK3-223ENST00000568488 RBMS1P29558 406 aaKnown RBP16.83■□□□□ 0.28
CLK3-223ENST00000568488 MAT2AP31153 395 aaKnown RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 893.6 ms