RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 CNGB3Q9NQW8 809 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 COMMD8Q9NX08 183 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 UXTQ9UBK9 157 aaPredicted RBP12.27□□□□□ -0.45
LDLR-212ENST00000560467 AMFRQ9UKV5 643 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 TFR2Q9UP52 801 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 NME7Q9Y5B8 376 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 SCN1AP35498 2009 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 SPAG17Q6Q759 2223 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 SOBPA7XYQ1 873 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 PATE3B3GLJ2 98 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 HSF2BPO75031 334 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 PALMO75781 387 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 TOP3BO95985 862 aaKnown RBP12.26□□□□□ -0.45
LDLR-212ENST00000560467 ZBED1O96006 694 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 USP17L7P0C7H9 530 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 SDC4P31431 198 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 CETN2P41208 172 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 GSCP56915 257 aaPredicted RBP12.26□□□□□ -0.45
LDLR-212ENST00000560467 YWHAZP63104 245 aaKnown RBP12.26□□□□□ -0.45
LDLR-212ENST00000560467 ADIGQ0VDE8 80 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 FOXC1Q12948 553 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 ACAP1Q15027 740 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 RPS6KA1Q15418 735 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 SH3PXD2AQ5TCZ1 1133 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 PMS2CLQ68D20 193 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 ANO7Q6IWH7 933 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 UNQ6494/PRO21346Q6UXR6 183 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 PHLDB2Q86SQ0 1253 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 NUP93Q8N1F7 819 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 ARL14EPQ8N8R7 260 aaPredicted RBP12.26□□□□□ -0.45
LDLR-212ENST00000560467 TPCN2Q8NHX9 752 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 USP33Q8TEY7 942 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 IRGQQ8WZA9 623 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 EXOC4Q96A65 974 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 FAM149B1Q96BN6 582 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 ARHGEF26Q96DR7 871 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 TRMT2BQ96GJ1 504 aaKnown RBP12.26□□□□□ -0.45
LDLR-212ENST00000560467 MYRFLQ96LU7 910 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 LINC00597Q9H2U6 94 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 ASNSD1Q9NWL6 643 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 TRIM10Q9UDY6 481 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 STAP1Q9ULZ2 295 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 GREB1Q4ZG55 1949 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 RALGAPA1Q6GYQ0 2036 aa12.26□□□□□ -0.45
LDLR-212ENST00000560467 TMEM110-MUSTN1A8MSY1 372 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 MIF4GDA9UHW6 222 aaKnown RBP12.25□□□□□ -0.45
LDLR-212ENST00000560467 F8VP50 259 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 PIK3R2O00459 728 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 SCAMP3O14828 347 aaKnown RBP12.25□□□□□ -0.45
LDLR-212ENST00000560467 ATMINO43313 823 aaPredicted RBP12.25□□□□□ -0.45
LDLR-212ENST00000560467 ERBB2P04626 1255 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 PDGFRAP16234 1089 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 PSMA2P25787 234 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 OPRD1P41143 372 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 HADHQ16836 314 aaKnown RBP12.25□□□□□ -0.45
LDLR-212ENST00000560467 GAB4Q2WGN9 574 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 C2CD6Q53TS8 623 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 C2orf27AQ580R0 203 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 ZFYVE27Q5T4F4 411 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 C11orf63Q6NUN7 778 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 PAQR9Q6ZVX9 377 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 SND1Q7KZF4 910 aaKnown RBP eCLIP12.25□□□□□ -0.451e-8■■■□□ 15.2
LDLR-212ENST00000560467 CYP2U1Q7Z449 544 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 TADA2BQ86TJ2 420 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 XYLT1Q86Y38 959 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 DNAAF5Q86Y56 855 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 SFTPA1Q8IWL2 248 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 CCDC33Q8N5R6 958 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 SPATA17Q96L03 361 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 MCEEQ96PE7 176 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 KCNK16Q96T55 309 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 SMOQ99835 787 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 RRN3Q9NYV6 651 aa12.25□□□□□ -0.45
LDLR-212ENST00000560467 TMEM191CA6NGB0 347 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 K7EQS6 105 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 KHNYNO15037 678 aaKnown RBP12.24□□□□□ -0.45
LDLR-212ENST00000560467 ZZEF1O43149 2961 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 BUB1BO60566 1050 aaPredicted RBP12.24□□□□□ -0.45
LDLR-212ENST00000560467 HNRNPLP14866 589 aaKnown RBP eCLIP12.24□□□□□ -0.45
LDLR-212ENST00000560467 GPD1P21695 349 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 YWHAQP27348 245 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 MAN1A1P33908 653 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 RPL34P49207 117 aaKnown RBP12.24□□□□□ -0.45
LDLR-212ENST00000560467 PSEN1P49768 467 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 ZXDBP98169 803 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 PTP4A2Q12974 167 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 USP39Q53GS9 565 aaKnown RBP12.24□□□□□ -0.45
LDLR-212ENST00000560467 DAB2IPQ5VWQ8 1189 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 DENND5BQ6ZUT9 1274 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 FAM183BPQ6ZVS7 135 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 SLC26A9Q7LBE3 791 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 ARCQ7LC44 396 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 SLC35F6Q8N357 371 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 MDGA1Q8NFP4 955 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 OLIG1Q8TAK6 271 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 FNIP1Q8TF40 1166 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 RNF139Q8WU17 664 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 ATG2BQ96BY7 2078 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 SLITRK1Q96PX8 696 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 CNPY3Q9BT09 278 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms