RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 TMEM225BP0DP42 221 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 CERS1P27544 350 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 CCKBRP32239 447 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 NAP1L1P55209 391 aaKnown RBP4.84□□□□□ -1.63
PRPF39-210ENST00000556718 TIRAPP58753 221 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 ACOX1Q15067 660 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 SMAD1Q15797 465 aaKnown RBP4.84□□□□□ -1.63
PRPF39-210ENST00000556718 PRAMEF17Q5VTA0 474 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 DGAT2L7PQ6IED9 249 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 MZT2BQ6NZ67 158 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 C1orf122Q6ZSJ8 110 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 SYT13Q7L8C5 426 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.84□□□□□ -1.63
PRPF39-210ENST00000556718 FAM109AQ8N4B1 249 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 C11orf44Q8N8P7 122 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 OVCA2Q8WZ82 227 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 REXO5Q96IC2 774 aaKnown RBP4.84□□□□□ -1.63
PRPF39-210ENST00000556718 TWNKQ96RR1 684 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 WDR24Q96S15 920 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 ALG8Q9BVK2 526 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 DPCDQ9BVM2 203 aaPredicted RBP4.84□□□□□ -1.63
PRPF39-210ENST00000556718 GPR63Q9BZJ6 419 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 FSCN3Q9NQT6 498 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 EHD3Q9NZN3 535 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 ZNF580Q9UK33 172 aa4.84□□□□□ -1.63
PRPF39-210ENST00000556718 SAC3D1A6NKF1 404 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 KIF28PB7ZC32 967 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 PPM1DO15297 605 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 SLC16A3O15427 465 aaKnown RBP4.83□□□□□ -1.64
PRPF39-210ENST00000556718 CNPP09543 421 aaKnown RBP4.83□□□□□ -1.64
PRPF39-210ENST00000556718 DRD1P21728 446 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 MMP8P22894 467 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 EIF4A1P60842 406 aaKnown RBP4.83□□□□□ -1.64
PRPF39-210ENST00000556718 SEMA3BQ13214 749 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 BFSP2Q13515 415 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 CBFBQ13951 182 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 TBCCQ15814 346 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 GALNTL6Q49A17 601 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 TMEM196Q5HYL7 178 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 ATG16L1Q676U5 607 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 CCDC144NLQ6NUI1 221 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 BBS12Q6ZW61 710 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 P3H2Q8IVL5 708 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 FSIP1Q8NA03 581 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 ZBTB10Q96DT7 871 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 FAR2Q96K12 515 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 PREBQ9HCU5 417 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 KCND3Q9UK17 655 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 RIMKLBQ9ULI2 386 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 TBX20Q9UMR3 447 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 SUFUQ9UMX1 484 aa4.83□□□□□ -1.64
PRPF39-210ENST00000556718 UBE2J1Q9Y385 318 aaPredicted RBP4.83□□□□□ -1.64
PRPF39-210ENST00000556718 LAS1LQ9Y4W2 734 aaKnown RBP4.83□□□□□ -1.64
PRPF39-210ENST00000556718 B4E171 279 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 AGPSO00116 658 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 DHHO43323 396 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 JTBO76095 146 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 LIPAP38571 399 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 TSPAN7P41732 249 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 NR4A2P43354 598 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 CCR5P51681 352 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 CLNS1AP54105 237 aaKnown RBP4.82□□□□□ -1.64
PRPF39-210ENST00000556718 RNASELQ05823 741 aaKnown RBP4.82□□□□□ -1.64
PRPF39-210ENST00000556718 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.82□□□□□ -1.64
PRPF39-210ENST00000556718 BMPR2Q13873 1038 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 ZNF260Q3ZCT1 412 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 NAA35Q5VZE5 725 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 MSANTD2Q6P1R3 559 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 CEP85Q6P2H3 762 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 ZNF551Q7Z340 670 aaPredicted RBP4.82□□□□□ -1.64
PRPF39-210ENST00000556718 DTX2Q86UW9 622 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 CAND1Q86VP6 1230 aaKnown RBP4.82□□□□□ -1.64
PRPF39-210ENST00000556718 LRRC71Q8N4P6 559 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 ANKRD44Q8N8A2 993 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 UCMAQ8WVF2 138 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 GLG1Q92896 1179 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 RSPRY1Q96DX4 576 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 RRP36Q96EU6 259 aaKnown RBP4.82□□□□□ -1.64
PRPF39-210ENST00000556718 ADGRE3Q9BY15 652 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 ARHGEF3Q9NR81 526 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 OLA1Q9NTK5 396 aaKnown RBP4.82□□□□□ -1.64
PRPF39-210ENST00000556718 TMEM160Q9NX00 188 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 MTMR4Q9NYA4 1195 aa4.82□□□□□ -1.64
PRPF39-210ENST00000556718 FER1L4A9Z1Z3 1794 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 CNTNAP2Q9UHC6 1331 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 A1L4Q6 167 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 A8MVJ9 347 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 KCNU1A8MYU2 1149 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 CTIFO43310 598 aaKnown RBP4.81□□□□□ -1.64
PRPF39-210ENST00000556718 HNRNPRO43390 633 aaKnown RBP4.81□□□□□ -1.64
PRPF39-210ENST00000556718 ANP32CO43423 234 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 RNASEH2AO75792 299 aaKnown RBP4.81□□□□□ -1.64
PRPF39-210ENST00000556718 DDX58O95786 925 aaKnown RBP4.81□□□□□ -1.64
PRPF39-210ENST00000556718 TBX18O95935 607 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 ONECUT2O95948 504 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 TUBB4AP04350 444 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 PDHA1P08559 390 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 ATP1A3P13637 1013 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 TNNT1P13805 278 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 CPA1P15085 419 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms