RNA–Protein interactions for RNA: ENST00000556339.5

ATXN3-240, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-240ENST00000556339 LINC01565O15544 149 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 CCP110O43303 1012 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 CTIFO43310 598 aaKnown RBP4.32□□□□□ -1.72
ATXN3-240ENST00000556339 MBTPS2O43462 519 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 OPHN1O60890 802 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 DNAJC6O75061 913 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 FGF18O76093 207 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 ALDH1A2O94788 518 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 PCDH8O95206 1070 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 CXCL14O95715 111 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 CCNE2O96020 404 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 ASLP04424 464 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 CYP3A4P08684 503 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 FAM86B2P0C5J1 330 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 XBP1P17861 261 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 TECP42680 631 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 AVPR1BP47901 424 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 ALDH7A1P49419 539 aaKnown RBP4.32□□□□□ -1.72
ATXN3-240ENST00000556339 GATMP50440 423 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 CLCN3P51790 818 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 GSDMDP57764 484 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 CDC42EP1Q00587 391 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 SETQ01105 290 aaPredicted RBP4.32□□□□□ -1.72
ATXN3-240ENST00000556339 RNASELQ05823 741 aaKnown RBP4.32□□□□□ -1.72
ATXN3-240ENST00000556339 STK3Q13188 491 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 ITGB3BPQ13352 177 aaPredicted RBP4.32□□□□□ -1.72
ATXN3-240ENST00000556339 SERINC3Q13530 473 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 ERCC6LQ2NKX8 1250 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 C2orf27AQ580R0 203 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 LRCH2Q5VUJ6 765 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 PLPP4Q5VZY2 271 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 KIAA1841Q6NSI8 718 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 CES5AQ6NT32 575 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 OLFML1Q6UWY5 402 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 FAM43BQ6ZT52 329 aaPredicted RBP4.32□□□□□ -1.72
ATXN3-240ENST00000556339 MIER3Q7Z3K6 550 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 CREBRFQ8IUR6 639 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 CCDC60Q8IWA6 550 aaPredicted RBP4.32□□□□□ -1.72
ATXN3-240ENST00000556339 LRRC71Q8N4P6 559 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 COLGALT1Q8NBJ5 622 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 LEO1Q8WVC0 666 aaPredicted RBP4.32□□□□□ -1.72
ATXN3-240ENST00000556339 PHKBQ93100 1093 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 CAVIN3Q969G5 261 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 ZNF689Q96CS4 500 aaPredicted RBP4.32□□□□□ -1.72
ATXN3-240ENST00000556339 BPIFA3Q9BQP9 254 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 GCOM2Q9BZD3 368 aaPredicted RBP4.32□□□□□ -1.72
ATXN3-240ENST00000556339 GTPBP4Q9BZE4 634 aaKnown RBP4.32□□□□□ -1.72
ATXN3-240ENST00000556339 INO80BQ9C086 356 aaPredicted RBP4.32□□□□□ -1.72
ATXN3-240ENST00000556339 KCNH6Q9H252 994 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 ERVK-5Q9HDB9 667 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 ENTPD7Q9NQZ7 604 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 RGS18Q9NS28 235 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 ANO10Q9NW15 660 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 SPG21Q9NZD8 308 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 VPS54Q9P1Q0 977 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 WDR81Q562E7 1941 aa4.32□□□□□ -1.72
ATXN3-240ENST00000556339 C5orf42Q9H799 3197 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 TRIOO75962 3097 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 COL1A2P08123 1366 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 RALGAPA2Q2PPJ7 1873 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 KDM3AQ9Y4C1 1321 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 A0A0A6YYJ9 748 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 CENPVL1A0A0U1RR11 272 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 CCDC194A0A1B0GVG4 234 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 SMTNL1A8MU46 457 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 PRR5-ARHGAP8B1AHC4 643 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 GOLGA6L19H0YKK7 550 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 H3BQV1 296 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 MSH4O15457 936 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 MGEA5O60502 916 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 DKC1O60832 514 aaKnown RBP eCLIP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 YEATS4O95619 227 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 MMP1P03956 469 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 GAAP10253 952 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 FGFR4P22455 802 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 DNAJB1P25685 340 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 PDIA3P30101 505 aaKnown RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 APOBEC3AP31941 199 aaPredicted RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 SFNP31947 248 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 CASRP41180 1078 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 JAK3P52333 1124 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 RCAN1P53805 252 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 ATXN1P54253 815 aaKnown RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 C21orf58P58505 322 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 TPM4P67936 248 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 UBE3AQ05086 875 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 NCBP1Q09161 790 aaKnown RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 RESTQ13127 1097 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 STX1AQ16623 288 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 LONRF3Q496Y0 759 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 CCDC73Q6ZRK6 1079 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 ADGRD2Q7Z7M1 963 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 FAM228AQ86W67 206 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 CXorf67Q86X51 503 aaPredicted RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 ECHDC2Q86YB7 292 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 SUGP1Q8IWZ8 645 aaKnown RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 ZZZ3Q8IYH5 903 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 EXOC8Q8IYI6 725 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 EFHBQ8N7U6 833 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 TBCKQ8TEA7 893 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms