RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 ECEL1O95672 775 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 C4BPAP04003 597 aaKnown RBP11.59□□□□□ -0.55
SHMT2-216ENST00000554975 CYP1A1P04798 512 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-216ENST00000554975 UNGP13051 313 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-216ENST00000554975 ARSAP15289 507 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 GABRR2P28476 465 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 ECHS1P30084 290 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 GNA15P30679 374 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 CAV1Q03135 178 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 GRSF1Q12849 480 aaKnown RBP eCLIP11.59□□□□□ -0.55
SHMT2-216ENST00000554975 CALCOCO2Q13137 446 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 COL28A1Q2UY09 1125 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 CEP85LQ5SZL2 805 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 TDRD10Q5VZ19 366 aaKnown RBP11.59□□□□□ -0.55
SHMT2-216ENST00000554975 DUPD1Q68J44 220 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 JADE1Q6IE81 842 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 MCOLN2Q8IZK6 566 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 BBOF1Q8ND07 529 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 C3orf20Q8ND61 904 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 RPLP0P6Q8NHW5 317 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 CCHCR1Q8TD31 782 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 ALG3Q92685 438 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 MAGOHBQ96A72 148 aaKnown RBP11.59□□□□□ -0.55
SHMT2-216ENST00000554975 PCDHB18PQ96TA0 734 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 FAM83CQ9BQN1 747 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 ZNF518BQ9C0D4 1074 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 NIF3L1Q9GZT8 377 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 EBF3Q9H4W6 596 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 OBP2AQ9NY56 170 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 CCL26Q9Y258 94 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 SLC27A5Q9Y2P5 690 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 URB1O60287 2271 aaKnown RBP11.59□□□□□ -0.55
SHMT2-216ENST00000554975 GOLGA4Q13439 2230 aaKnown RBP11.58□□□□□ -0.56
SHMT2-216ENST00000554975 MYO1FO00160 1098 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 DAPK3O43293 454 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 ATG13O75143 517 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 PROSCO94903 275 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 TNNC2P02585 160 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 NUDT17P0C025 328 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 TMEM191BP0C7N4 346 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 RDXP35241 583 aaKnown RBP11.58□□□□□ -0.56
SHMT2-216ENST00000554975 HSD17B3P37058 310 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 PEX5P50542 639 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 DGKEP52429 567 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 EPHB3P54753 998 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 NOMO3P69849 1222 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 IFFO1Q0D2I5 559 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 NCOA4Q13772 614 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 DMC1Q14565 340 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 TMEM132DQ14C87 1099 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 DENND2CQ68D51 928 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 MON1BQ7L1V2 547 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 DNAJB7Q7Z6W7 309 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-216ENST00000554975 PHF13Q86YI8 300 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-216ENST00000554975 RHOT1Q8IXI2 618 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 CHCHD4Q8N4Q1 142 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 TTC39CQ8N584 583 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 ATAD1Q8NBU5 361 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 RBBP8NLQ8NC74 664 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-216ENST00000554975 UBLCP1Q8WVY7 318 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-216ENST00000554975 PSMG2Q969U7 264 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 ANKRD36BP1Q96IX9 119 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 RBM41Q96IZ5 413 aaKnown RBP11.58□□□□□ -0.56
SHMT2-216ENST00000554975 CNOT10Q9H9A5 744 aaKnown RBP11.58□□□□□ -0.56
SHMT2-216ENST00000554975 IL21Q9HBE4 155 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 TMBIM4Q9HC24 238 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 IP6K2Q9UHH9 426 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 CPSF3Q9UKF6 684 aaKnown RBP11.58□□□□□ -0.56
SHMT2-216ENST00000554975 STRIP2Q9ULQ0 834 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 MAFFQ9ULX9 164 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 PCDHB8Q9UN66 801 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 PCDHB4Q9Y5E5 795 aa11.58□□□□□ -0.56
SHMT2-216ENST00000554975 MTMR11A4FU01 709 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 FAM189A1O60320 539 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 APBB3O95704 486 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 ASS1P00966 412 aaKnown RBP11.57□□□□□ -0.56
SHMT2-216ENST00000554975 NFICP08651 508 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 FAM153BP0C7A2 387 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 CYP3A5P20815 502 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 ATP5DP30049 168 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 GALK1P51570 392 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 GYS2P54840 703 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 GNGT1P63211 74 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 SIM1P81133 766 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-216ENST00000554975 ADCY2Q08462 1091 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 TRPC3Q13507 836 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 RUNX3Q13761 415 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 FAM153CQ494X1 144 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 TTMPQ5BVD1 217 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 CCDC137Q6PK04 289 aaKnown RBP11.57□□□□□ -0.56
SHMT2-216ENST00000554975 DSTYKQ6XUX3 929 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 MICALCLQ6ZW33 695 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 B4GALNT4Q76KP1 1039 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 SYT13Q7L8C5 426 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 CYP2U1Q7Z449 544 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 PIP4P1Q86T03 277 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 ZSWIM2Q8NEG5 633 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 APPL2Q8NEU8 664 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 PIGKQ92643 395 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 TSPAN18Q96SJ8 248 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms