RNA–Protein interactions for RNA: ENST00000554776.5

SCFD1-213, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-213ENST00000554776 PCDHB2Q9Y5E7 798 aa3.53□□□□□ -1.84
SCFD1-213ENST00000554776 SPATA31A1Q5TZJ5 1347 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 CCDC187A0A096LP49 1063 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 WDR91A4D1P6 747 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 CLIC1O00299 241 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 FYB1O15117 783 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 GCATO75600 419 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 RBM5P52756 815 aaKnown RBP eCLIP3.52□□□□□ -1.85
SCFD1-213ENST00000554776 POLE2P56282 527 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 FAM3BP58499 235 aaPredicted RBP3.52□□□□□ -1.85
SCFD1-213ENST00000554776 KRTAP1-1Q07627 177 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 CSHL1Q14406 222 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 MFSD13AQ14CX5 517 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 DLGAP5Q15398 846 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 SUPT20HL1Q3ZLR7 823 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 MTX3Q5HYI7 312 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 MORN5Q5VZ52 161 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 ZNF626Q68DY1 528 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 ANKRD40Q6AI12 368 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 SLC18B1Q6NT16 456 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 NFRKBQ6P4R8 1299 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 TMEM65Q6PI78 240 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 ZNF813Q6ZN06 617 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 RAB11FIP2Q7L804 512 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 KRT27Q7Z3Y8 459 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 LRRTM4Q86VH4 590 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 TMTC1Q8IUR5 882 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 FAM71DQ8N9W8 422 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 TEX19Q8NA77 164 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 OR6Y1Q8NGX8 325 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 SPPL3Q8TCT6 385 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 WDR60Q8WVS4 1066 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 USP13Q92995 863 aaPredicted RBP3.52□□□□□ -1.85
SCFD1-213ENST00000554776 HIC2Q96JB3 615 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 MPP4Q96JB8 637 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 TBATAQ96M53 351 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 EIF3CQ99613 913 aaKnown RBP3.52□□□□□ -1.85
SCFD1-213ENST00000554776 SH2D3AQ9BRG2 576 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 PAAF1Q9BRP4 392 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 RNF26Q9BY78 433 aaPredicted RBP3.52□□□□□ -1.85
SCFD1-213ENST00000554776 CDCP1Q9H5V8 836 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 CCDC134Q9H6E4 229 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 RMI1Q9H9A7 625 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 PDGFCQ9NRA1 345 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 ABHD10Q9NUJ1 306 aa3.52□□□□□ -1.85
SCFD1-213ENST00000554776 WDR17Q8IZU2 1322 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 CYP2D7A0A087X1C5 515 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 SMIM35A0A1B0GVV1 85 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 AGAP5A6NIR3 686 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 TMEM232C9JQI7 657 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 STX16-NPEPL1H3BU86 382 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 STX16O14662 325 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 EPB41L2O43491 1005 aaKnown RBP3.51□□□□□ -1.85
SCFD1-213ENST00000554776 BCAR3O75815 825 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 ATP1A3P13637 1013 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 MATN1P21941 496 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 MMP8P22894 467 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 SFPQP23246 707 aaKnown RBP eCLIP3.51□□□□□ -1.85
SCFD1-213ENST00000554776 DUSP1P28562 367 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 SERPINA4P29622 427 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 THBS4P35443 961 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 IGHMBP2P38935 993 aaKnown RBP3.51□□□□□ -1.85
SCFD1-213ENST00000554776 JAK3P52333 1124 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 ACTR2P61160 394 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 WDR5P61964 334 aaKnown RBP3.51□□□□□ -1.85
SCFD1-213ENST00000554776 SF3A3Q12874 501 aaKnown RBP eCLIP3.51□□□□□ -1.85
SCFD1-213ENST00000554776 SEMA3BQ13214 749 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 SLC14A1Q13336 389 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 DAZAP2Q15038 168 aaPredicted RBP3.51□□□□□ -1.85
SCFD1-213ENST00000554776 SEC23BQ15437 767 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 TTC22Q5TAA0 569 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 MEX3CQ5U5Q3 659 aaKnown RBP3.51□□□□□ -1.85
SCFD1-213ENST00000554776 ACSM6Q6P461 480 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 VSTM1Q6UX27 236 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 C16orf89Q6UX73 402 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 MAATS1Q7Z4T9 603 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 TRABD2AQ86V40 505 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 IL17REQ8NFR9 667 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 THAP4Q8WY91 577 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 NPIPB3Q92617 1050 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 HS6ST2Q96MM7 605 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 ZNF778Q96MU6 729 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 PRSS22Q9GZN4 317 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 NRIP3Q9NQ35 241 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 PDP2Q9P2J9 529 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 RAB21Q9UL25 225 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 C19orf53Q9UNZ5 99 aaPredicted RBP3.51□□□□□ -1.85
SCFD1-213ENST00000554776 BTBD3Q9Y2F9 522 aa3.51□□□□□ -1.85
SCFD1-213ENST00000554776 LOC105369274A0A096LPK9 316 aa3.5□□□□□ -1.85
SCFD1-213ENST00000554776 LOC102723532A0A0G2JNH3 316 aa3.5□□□□□ -1.85
SCFD1-213ENST00000554776 A0A1B0GVC2 190 aa3.5□□□□□ -1.85
SCFD1-213ENST00000554776 A6NLC8 198 aa3.5□□□□□ -1.85
SCFD1-213ENST00000554776 SLC38A8A6NNN8 435 aa3.5□□□□□ -1.85
SCFD1-213ENST00000554776 C16orf96A6NNT2 1141 aa3.5□□□□□ -1.85
SCFD1-213ENST00000554776 J3KRW8 73 aa3.5□□□□□ -1.85
SCFD1-213ENST00000554776 TK1P04183 234 aa3.5□□□□□ -1.85
SCFD1-213ENST00000554776 CPA1P15085 419 aa3.5□□□□□ -1.85
SCFD1-213ENST00000554776 PAPOLAP51003 745 aaKnown RBP3.5□□□□□ -1.85
SCFD1-213ENST00000554776 ZNF81P51508 661 aa3.5□□□□□ -1.85
SCFD1-213ENST00000554776 CCR5P51681 352 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms