RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 SERAC1Q96JX3 654 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 ZNF578Q96N58 590 aaPredicted RBP13.48□□□□□ -0.25
VPS29-211ENST00000553128 FBRSQ9HAH7 460 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 NCKAP1Q9Y2A7 1128 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 NBPF19A0A087WUL8 3843 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 SIGLEC6O43699 453 aa13.47□□□□□ -0.25
VPS29-211ENST00000553128 RNASEH2AO75792 299 aaKnown RBP13.47□□□□□ -0.25
VPS29-211ENST00000553128 RXRGP48443 463 aa13.47□□□□□ -0.25
VPS29-211ENST00000553128 UCNP55089 124 aa13.47□□□□□ -0.25
VPS29-211ENST00000553128 PPP2CBP62714 309 aa13.47□□□□□ -0.25
VPS29-211ENST00000553128 PPP2CAP67775 309 aa13.47□□□□□ -0.25
VPS29-211ENST00000553128 GABREP78334 506 aa13.47□□□□□ -0.25
VPS29-211ENST00000553128 CLDN10P78369 228 aa13.47□□□□□ -0.25
VPS29-211ENST00000553128 TRIP4Q15650 581 aaPredicted RBP13.47□□□□□ -0.25
VPS29-211ENST00000553128 FAM26FQ5R3K3 315 aa13.47□□□□□ -0.25
VPS29-211ENST00000553128 PPP1R26Q5T8A7 1209 aaPredicted RBP13.47□□□□□ -0.25
VPS29-211ENST00000553128 PRICKLE2Q7Z3G6 844 aa13.47□□□□□ -0.25
VPS29-211ENST00000553128 AHI1Q8N157 1196 aa13.47□□□□□ -0.25
VPS29-211ENST00000553128 KCNE4Q8WWG9 221 aa13.47□□□□□ -0.25
VPS29-211ENST00000553128 GOLGA1Q92805 767 aa13.47□□□□□ -0.25
VPS29-211ENST00000553128 SKA1Q96BD8 255 aa13.47□□□□□ -0.25
VPS29-211ENST00000553128 MED8Q96G25 268 aa13.47□□□□□ -0.25
VPS29-211ENST00000553128 DUSP16Q9BY84 665 aa13.47□□□□□ -0.25
VPS29-211ENST00000553128 STX6O43752 255 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 EXOC3O60645 756 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 MYF5P13349 255 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 CASP1P29466 404 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 ASIC1P78348 528 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 PDE4CQ08493 712 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 VAC14Q08AM6 782 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 INCA1Q0VD86 236 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 CST6Q15828 149 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 SGSM1Q2NKQ1 1148 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 CDCP2Q5VXM1 449 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 RSRC2Q7L4I2 434 aaKnown RBP13.46□□□□□ -0.25
VPS29-211ENST00000553128 BHLHA9Q7RTU4 235 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 MMAAQ8IVH4 418 aaKnown RBP13.46□□□□□ -0.25
VPS29-211ENST00000553128 SLC25A45Q8N413 288 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 AADATQ8N5Z0 425 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 OR2T34Q8NGX1 318 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 SNRNP27Q8WVK2 155 aaKnown RBP13.46□□□□□ -0.25
VPS29-211ENST00000553128 PLD4Q96BZ4 506 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 TMA16Q96EY4 203 aaKnown RBP13.46□□□□□ -0.25
VPS29-211ENST00000553128 LMLNQ96KR4 655 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 CDK5RAP1Q96SZ6 601 aaKnown RBP13.46□□□□□ -0.25
VPS29-211ENST00000553128 ERVMER34-1Q9H9K5 563 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 APOBEC3GQ9HC16 384 aaKnown RBP13.46□□□□□ -0.25
VPS29-211ENST00000553128 ASCL3Q9NQ33 180 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 KBTBD4Q9NVX7 518 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 SUN2Q9UH99 717 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 SFMBT1Q9UHJ3 866 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 SMC3Q9UQE7 1217 aa13.46□□□□□ -0.25
VPS29-211ENST00000553128 RELNP78509 3460 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 GOLGA6L7A0A1B0GV03 622 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 A0A1W2PNU3 283 aaPredicted RBP13.45□□□□□ -0.26
VPS29-211ENST00000553128 LRRC72A6NJI9 287 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 USP12O75317 370 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 DXOO77932 396 aaKnown RBP13.45□□□□□ -0.26
VPS29-211ENST00000553128 ASS1P00966 412 aaKnown RBP13.45□□□□□ -0.26
VPS29-211ENST00000553128 P4HA1P13674 534 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 CD58P19256 250 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 POLR2EP19388 210 aaKnown RBP13.45□□□□□ -0.26
VPS29-211ENST00000553128 CSRP3P50461 194 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 CCR5P51681 352 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 ADPRHP54922 357 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 YWHAGP61981 247 aaKnown RBP eCLIP13.45□□□□□ -0.26
VPS29-211ENST00000553128 E2F4Q16254 413 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 HNRNPA1L2Q32P51 320 aaKnown RBP13.45□□□□□ -0.26
VPS29-211ENST00000553128 ZACNQ401N2 412 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 C1orf220Q5T0J3 134 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 C9orf64Q5T6V5 341 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 RFWD3Q6PCD5 774 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 C12orf56Q8IXR9 622 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 VCPIP1Q96JH7 1222 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 MRGPRX3Q96LB0 322 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 OMDQ99983 421 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 NT5C1AQ9BXI3 368 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 TNMDQ9H2S6 317 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 STOML2Q9UJZ1 356 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 INTS6Q9UL03 887 aaKnown RBP13.45□□□□□ -0.26
VPS29-211ENST00000553128 STRIP2Q9ULQ0 834 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 SCML1Q9UN30 329 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 CA5BQ9Y2D0 317 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 SSUH2Q9Y2M2 353 aa13.45□□□□□ -0.26
VPS29-211ENST00000553128 VPS37CA5D8V6 355 aaPredicted RBP13.44□□□□□ -0.26
VPS29-211ENST00000553128 TTC34A8MYJ7 566 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 MSI1O43347 362 aaKnown RBP13.44□□□□□ -0.26
VPS29-211ENST00000553128 HLA-DRAP01903 254 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 ATP5BP06576 529 aaKnown RBP13.44□□□□□ -0.26
VPS29-211ENST00000553128 SLC8A1P32418 973 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 CTSOP43234 321 aaPredicted RBP13.44□□□□□ -0.26
VPS29-211ENST00000553128 PSMD8P48556 350 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 METAP1P53582 386 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 AP3M2P53677 418 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 SNRPFP62306 86 aaKnown RBP13.44□□□□□ -0.26
VPS29-211ENST00000553128 E2F1Q01094 437 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 ZNF394Q53GI3 561 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 RAB41Q5JT25 222 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 COLEC12Q5KU26 742 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 SV2AQ7L0J3 742 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms