RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SULT2A1Q06520 285 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 KLF10Q13118 480 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 DCTN2Q13561 401 aaKnown RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 LPIN1Q14693 890 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 PPP2R5DQ14738 602 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 NOMO1Q15155 1222 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 DBN1Q16643 649 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 MAP3K21Q5TCX8 1036 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 SLC9A4Q6AI14 798 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 STYK1Q6J9G0 422 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 POTEHQ6S545 545 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 CCDC60Q8IWA6 550 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 PLD5Q8N7P1 536 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 SNX31Q8N9S9 440 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 CMASQ8NFW8 434 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 FNDC8Q8TC99 324 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 SLC29A1Q99808 456 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 DCUN1D5Q9BTE7 237 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 CEP41Q9BYV8 373 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 TSPYL2Q9H2G4 693 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 PNPLA8Q9NP80 782 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 MTMR10Q9NXD2 777 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 DDX56Q9NY93 547 aaKnown RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 USP18Q9UMW8 372 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 PSMD13Q9UNM6 376 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 DMTF1Q9Y222 760 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 QSER1Q2KHR3 1735 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 TRIP11Q15643 1979 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 WDR27A2RRH5 827 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 FAM159BA6NKW6 160 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-214ENST00000552783 RGS20O76081 388 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 TRUB2O95900 331 aaKnown RBP4.98□□□□□ -1.61
LIMA1-214ENST00000552783 CALB1P05937 261 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF26P17031 533 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-214ENST00000552783 CD247P20963 164 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 OSBPP22059 807 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 GARTP22102 1010 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 GABRB3P28472 473 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 RXRGP48443 463 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 NAA20P61599 178 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 CYLC2Q14093 348 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ADGRE1Q14246 886 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF423Q2M1K9 1284 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF554Q86TJ5 538 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 SNX32Q86XE0 403 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 TRIM50Q86XT4 487 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 XYLT1Q86Y38 959 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 RNF149Q8NC42 400 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 TMEM35BQ8NCS4 154 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 BHLHE22Q8NFJ8 381 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-214ENST00000552783 SLC35B4Q969S0 331 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 RANBP9Q96S59 729 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 SIKE1Q9BRV8 207 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 SLC2A11Q9BYW1 496 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF696Q9H7X3 374 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 PXMP2Q9NR77 195 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF180Q9UJW8 692 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 CLEC11AQ9Y240 323 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 SSX2IPQ9Y2D8 614 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 NRXN2Q9P2S2 1712 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 BRWD3Q6RI45 1802 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 MGAMO43451 1857 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 SYNJ2BP-COX16A0A087WUM0 186 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 BTBD19C9JJ37 291 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF189O75820 626 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-214ENST00000552783 DGAT1O75907 488 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ASS1P00966 412 aaKnown RBP4.98□□□□□ -1.61
LIMA1-214ENST00000552783 LTFP02788 710 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 GNAO1P09471 354 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 GABRB2P47870 512 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 SERPINB8P50452 374 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ATXN1P54253 815 aaKnown RBP4.98□□□□□ -1.61
LIMA1-214ENST00000552783 IRF9Q00978 393 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 CNTN2Q02246 1040 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 FLOT2Q14254 428 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 KRT81Q14533 505 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 C16orf72Q14CZ0 275 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 EMC2Q15006 297 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 IL23RQ5VWK5 629 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 DSELQ8IZU8 1212 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 MYO1HQ8N1T3 1032 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.98□□□□□ -1.61
LIMA1-214ENST00000552783 TMEM102Q8N9M5 508 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-214ENST00000552783 DEPDC1BQ8WUY9 529 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ATP6V1E2Q96A05 226 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 RCN3Q96D15 328 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 MRPS26Q9BYN8 205 aaKnown RBP4.98□□□□□ -1.61
LIMA1-214ENST00000552783 PCDHAC1Q9H158 963 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 SDCBP2Q9H190 292 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 CAB39LQ9H9S4 337 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF302Q9NR11 478 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 COX16Q9P0S2 106 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 CDC14AQ9UNH5 594 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-214ENST00000552783 BTAF1O14981 1849 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 NDC80O14777 642 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 CHADO15335 359 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 BIRC5O15392 142 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 KLHL2O95198 593 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms