RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 C9IYK1 514 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 PPP1R12AO14974 1030 aaPredicted RBP19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 PGK1P00558 417 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 NCAM1P13591 858 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 ERCC2P18074 760 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 GJA9P57773 515 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 PARP6Q2NL67 630 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 ARMC2Q8NEN0 867 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 NTAN1Q96AB6 310 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 LRMDAQ9H2I8 198 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 AGO3Q9H9G7 860 aaKnown RBP19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 CHST12Q9NRB3 414 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 PCMTD2Q9NV79 361 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 MKS1Q9NXB0 559 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 ZFP69BQ9UJL9 534 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 FBXW11Q9UKB1 542 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 VGLL3A8MV65 326 aa19.06■□□□□ 0.64
PRPF40B-208ENST00000548436 I3L4J1 428 aa19.06■□□□□ 0.64
PRPF40B-208ENST00000548436 CBX6O95503 412 aa19.06■□□□□ 0.64
PRPF40B-208ENST00000548436 SCAPQ12770 1279 aa19.06■□□□□ 0.64
PRPF40B-208ENST00000548436 TIGD5Q53EQ6 642 aa19.06■□□□□ 0.64
PRPF40B-208ENST00000548436 ZNF449Q6P9G9 518 aa19.06■□□□□ 0.64
PRPF40B-208ENST00000548436 BHLHA9Q7RTU4 235 aa19.06■□□□□ 0.64
PRPF40B-208ENST00000548436 SLC7A6OSQ96CW6 309 aaPredicted RBP19.06■□□□□ 0.64
PRPF40B-208ENST00000548436 CDH9Q9ULB4 789 aa19.06■□□□□ 0.64
PRPF40B-208ENST00000548436 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 KCNK1O00180 336 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 KLF11O14901 512 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 KPNA6O60684 536 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 TGDSO95455 350 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 LTFP02788 710 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 SERPINB9P50453 376 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 NIPAL4Q0D2K0 466 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 OLIG2Q13516 323 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 UPP1Q16831 310 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 CTC1Q2NKJ3 1217 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 BSPRYQ5W0U4 402 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 CES4AQ5XG92 561 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 CLNKQ7Z7G1 428 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 RSPH3Q86UC2 560 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 NDUFAF2Q8N183 169 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 RTP3Q9BQQ7 232 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 GIT1Q9Y2X7 761 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 CEP350Q5VT06 3117 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 TOP3BO95985 862 aaKnown RBP19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 IL1BP01584 269 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 DLDP09622 509 aaKnown RBP19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 AIF1P55008 147 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 MGAT3Q09327 533 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 SPDYAQ5MJ70 313 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 MARK2Q7KZI7 788 aaKnown RBP19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 PID1Q7Z2X4 250 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 SERINC5Q86VE9 423 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 CEP57Q86XR8 500 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 EDEM1Q92611 657 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 PGBD4Q96DM1 585 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 TBC1D31Q96DN5 1066 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 PGAP3Q96FM1 320 aaPredicted RBP19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 FERMT1Q9BQL6 677 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 GORASP1Q9BQQ3 440 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 DDIT4Q9NX09 232 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 SYBUQ9NX95 663 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 IGSF9Q9P2J2 1179 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 PTCH2Q9Y6C5 1203 aa19.05■□□□□ 0.64
PRPF40B-208ENST00000548436 CRHR1P34998 444 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 GTF2A1P52655 376 aaPredicted RBP19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 ARFIP2P53365 341 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 TPI1P60174 286 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 CRYMQ14894 314 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 TIFABQ6ZNK6 161 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 NPWQ8N729 165 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 SMARCD1Q96GM5 515 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 TMEM120AQ9BXJ8 343 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 HEY2Q9UBP5 337 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 SNX10Q9Y5X0 201 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 MGEA5O60502 916 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 CYBAP13498 195 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 PGAM1P18669 254 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 PTPN3P26045 913 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 SLC8A1P32418 973 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 RPL9P32969 192 aaKnown RBP19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 IFRD2Q12894 506 aaPredicted RBP19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 CRHR2Q13324 411 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 E2F5Q15329 346 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 PAN2Q504Q3 1202 aaKnown RBP19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 MRPL10Q7Z7H8 261 aaKnown RBP19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 AGAP11Q8TF27 550 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 INPP5DQ92835 1189 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 MYLPFQ96A32 169 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 COLEC11Q9BWP8 271 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 SIRPGQ9P1W8 387 aa19.04■□□□□ 0.64
PRPF40B-208ENST00000548436 PTPRDP23468 1912 aa19.03■□□□□ 0.64
PRPF40B-208ENST00000548436 C2orf71A6NGG8 1288 aa19.03■□□□□ 0.64
PRPF40B-208ENST00000548436 IBSPP21815 317 aaPredicted RBP19.03■□□□□ 0.64
PRPF40B-208ENST00000548436 BST1Q10588 318 aa19.03■□□□□ 0.64
PRPF40B-208ENST00000548436 PGLYRP2Q96PD5 576 aa19.03■□□□□ 0.64
PRPF40B-208ENST00000548436 ZFYVE28Q9HCC9 887 aa19.03■□□□□ 0.64
PRPF40B-208ENST00000548436 CSNK1G1Q9HCP0 422 aa19.03■□□□□ 0.64
PRPF40B-208ENST00000548436 NMRK2Q9NPI5 230 aa19.03■□□□□ 0.64
PRPF40B-208ENST00000548436 IL1RAPL1Q9NZN1 696 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms