RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CCNFP41002 786 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 MMP13P45452 471 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 KHDC1Q4VXA5 237 aaKnown RBP5.65□□□□□ -1.51
LIMA1-203ENST00000547825 DUPD1Q68J44 220 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 MYLK4Q86YV6 388 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-203ENST00000547825 EGFL6Q8IUX8 553 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 LRRC57Q8N9N7 239 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 HAS1Q92839 578 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 FAM20AQ96MK3 541 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF570Q96NI8 536 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF184Q99676 751 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-203ENST00000547825 BTBD10Q9BSF8 475 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 MSTO1Q9BUK6 570 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 PIDD1Q9HB75 910 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 KRT82Q9NSB4 513 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 GMIPQ9P107 970 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 NKX1-2Q9UD57 310 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-203ENST00000547825 MTO1Q9Y2Z2 717 aaKnown RBP5.65□□□□□ -1.51
LIMA1-203ENST00000547825 DTNAQ9Y4J8 743 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 CNTRLQ7Z7A1 2325 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 ESYT2A0FGR8 921 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 E9PBE3 544 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 KLHL41O60662 606 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 KATNA1O75449 491 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 ATP6V1C1P21283 382 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 TNFRSF8P28908 595 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 SERPINB5P36952 375 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 BCAR1P56945 870 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 SLC25A3Q00325 362 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 POU5F1Q01860 360 aaKnown RBP5.65□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF543Q08ER8 600 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 NOGQ13253 232 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 BLMHQ13867 455 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 SNRNP35Q16560 246 aaKnown RBP5.65□□□□□ -1.51
LIMA1-203ENST00000547825 IRGCQ6NXR0 463 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 IRF2BP2Q7Z5L9 587 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 CDR2LQ86X02 465 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-203ENST00000547825 RNF169Q8NCN4 708 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 TMEM35BQ8NCS4 154 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 SPATA18Q8TC71 538 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 ATXN2LQ8WWM7 1075 aaKnown RBP5.65□□□□□ -1.51
LIMA1-203ENST00000547825 BRI3BPQ8WY22 251 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 USP13Q92995 863 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-203ENST00000547825 PAFAH2Q99487 392 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 MPHOSPH6Q99547 160 aaKnown RBP5.65□□□□□ -1.51
LIMA1-203ENST00000547825 PAGR1Q9BTK6 254 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 EFHD1Q9BUP0 239 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 UNKQ9C0B0 810 aaKnown RBP5.65□□□□□ -1.51
LIMA1-203ENST00000547825 ING2Q9H160 280 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 UVRAGQ9P2Y5 699 aa5.65□□□□□ -1.51
LIMA1-203ENST00000547825 DOCK5Q9H7D0 1870 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 CCDC189A1A4V9 331 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 TMEM150BA6NC51 233 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 ANKRD63C9JTQ0 380 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 AGRPO00253 132 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 GNGT2O14610 69 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 AHCYL1O43865 530 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 CNMDO75829 334 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 HSPA1AP0DMV8 641 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 HSPA1BP0DMV9 641 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 ARAFP10398 606 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 RPA1P27694 616 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 CA8P35219 290 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 NUDT2P50583 147 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 GEMIN4P57678 1058 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 NFKB2Q00653 900 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 ITKQ08881 620 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 LRRC8EQ6NSJ5 796 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 C17orf99Q6UX52 265 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 C8orf86Q6ZUL3 223 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 UBE2Q1Q7Z7E8 422 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 ARHGEF19Q8IW93 802 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 DEFB107AQ8IZN7 70 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 C1orf131Q8NDD1 294 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 LNX1Q8TBB1 728 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 TAS1R2Q8TE23 839 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 MFSD3Q96ES6 412 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 SGF29Q96ES7 293 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 DNAJC1Q96KC8 554 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 CCDC17Q96LX7 622 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 ZMAT2Q96NC0 199 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 MRPL1Q9BYD6 325 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 GANQ9H2C0 597 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 OLFML3Q9NRN5 406 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 GGA2Q9UJY4 613 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 SYNPO2Q9UMS6 1093 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 GBF1Q92538 1859 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 C9IYK1 514 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 DDX3YO15523 660 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 CA12O43570 354 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 AKAP10O43572 662 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 KDM1AO60341 852 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF189O75820 626 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 PSMG1O95456 288 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 TNNC2P02585 160 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 PROCP04070 461 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 GARSP41250 739 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 SOX10P56693 466 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 TBX4P57082 545 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 SNX16P57768 344 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms