RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 MTHFD1LQ6UB35 978 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 TMEM110Q86TL2 294 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 CDKL3Q8IVW4 592 aaPredicted RBP15.46■□□□□ 0.07
USP28-214ENST00000545540 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.46■□□□□ 0.07
USP28-214ENST00000545540 ARNTL2Q8WYA1 636 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 C7orf26Q96N11 449 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 SLC4A5Q9BY07 1137 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 STX18Q9P2W9 335 aaKnown RBP15.46■□□□□ 0.07
USP28-214ENST00000545540 ANK1P16157 1881 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 RECQL4O94761 1208 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 ACADSP16219 412 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 ATICP31939 592 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 CRHR1P34998 444 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 KRT72Q14CN4 511 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 R3HDM1Q15032 1099 aaKnown RBP15.46■□□□□ 0.07
USP28-214ENST00000545540 CFAP157Q5JU67 520 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 NAPRTQ6XQN6 538 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 RNF111Q6ZNA4 994 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 ZNF483Q8TF39 744 aaPredicted RBP15.46■□□□□ 0.07
USP28-214ENST00000545540 ANLNQ9NQW6 1124 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 C2CD2Q9Y426 696 aa15.46■□□□□ 0.07
USP28-214ENST00000545540 M0QYT0 321 aa15.46■□□□□ 0.06
USP28-214ENST00000545540 TXNDC9O14530 226 aa15.46■□□□□ 0.06
USP28-214ENST00000545540 SIN3BO75182 1162 aa15.46■□□□□ 0.06
USP28-214ENST00000545540 SPAG6O75602 509 aa15.46■□□□□ 0.06
USP28-214ENST00000545540 SKIP12755 728 aa15.46■□□□□ 0.06
USP28-214ENST00000545540 ARSAP15289 507 aa15.46■□□□□ 0.06
USP28-214ENST00000545540 HOXA11P31270 313 aaPredicted RBP15.46■□□□□ 0.06
USP28-214ENST00000545540 SERPINB5P36952 375 aa15.46■□□□□ 0.06
USP28-214ENST00000545540 PCLAFQ15004 111 aa15.46■□□□□ 0.06
USP28-214ENST00000545540 CERCAMQ5T4B2 595 aa15.46■□□□□ 0.06
USP28-214ENST00000545540 MBLAC2Q68D91 279 aa15.46■□□□□ 0.06
USP28-214ENST00000545540 PIGZQ86VD9 579 aa15.46■□□□□ 0.06
USP28-214ENST00000545540 PIWIL2Q8TC59 973 aaKnown RBP15.46■□□□□ 0.06
USP28-214ENST00000545540 ZNF669Q96BR6 464 aaPredicted RBP15.46■□□□□ 0.06
USP28-214ENST00000545540 ITGA11Q9UKX5 1188 aa15.46■□□□□ 0.06
USP28-214ENST00000545540 PLA2G4CQ9UP65 541 aa15.46■□□□□ 0.06
USP28-214ENST00000545540 APOBEC2Q9Y235 224 aaKnown RBP15.46■□□□□ 0.06
USP28-214ENST00000545540 FIS1Q9Y3D6 152 aa15.46■□□□□ 0.06
USP28-214ENST00000545540 RGPD3A6NKT7 1758 aaPredicted RBP15.46■□□□□ 0.06
USP28-214ENST00000545540 RGPD4Q7Z3J3 1758 aa15.46■□□□□ 0.06
USP28-214ENST00000545540 PAPPA2Q9BXP8 1791 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 A0A088AWK7 358 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 ETS2P15036 469 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 SERPINB6P35237 376 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 ARL4AP40617 200 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 TNFAIP2Q03169 654 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 SOX4Q06945 474 aaPredicted RBP15.45■□□□□ 0.06
USP28-214ENST00000545540 CUL3Q13618 768 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 PKDCCQ504Y2 493 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 SPDYAQ5MJ70 313 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 WDR75Q8IWA0 830 aaKnown RBP15.45■□□□□ 0.06
USP28-214ENST00000545540 DEFB107AQ8IZN7 70 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 ZNF567Q8N184 647 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 OPTNQ96CV9 577 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 CELF6Q96J87 481 aaKnown RBP15.45■□□□□ 0.06
USP28-214ENST00000545540 ZNF670Q9BS34 389 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 THAP1Q9NVV9 213 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 MOCS1Q9NZB8 636 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 SDR42E2A6NKP2 422 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 TRDMT1O14717 391 aaKnown RBP15.45■□□□□ 0.06
USP28-214ENST00000545540 GAS2O43903 313 aaKnown RBP15.45■□□□□ 0.06
USP28-214ENST00000545540 LTFP02788 710 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 MARCH8Q5T0T0 291 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 ZNF781Q8N8C0 355 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 MAPK15Q8TD08 544 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 EDEM1Q92611 657 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 TUBGCP5Q96RT8 1024 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 TSC22D3Q99576 134 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 ZNF184Q99676 751 aaPredicted RBP15.45■□□□□ 0.06
USP28-214ENST00000545540 RHOBTB2Q9BYZ6 727 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 EBF3Q9H4W6 596 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 PNPLA8Q9NP80 782 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 KLHL8Q9P2G9 620 aaPredicted RBP15.45■□□□□ 0.06
USP28-214ENST00000545540 MEIS3P2A8K0S8 358 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 PLIN3O60664 434 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 SNNO75324 88 aaPredicted RBP15.45■□□□□ 0.06
USP28-214ENST00000545540 TM7SF2O76062 418 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 LMNAP02545 664 aaKnown RBP15.45■□□□□ 0.06
USP28-214ENST00000545540 PRKCGP05129 697 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 CHRNGP07510 517 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 AFF1P51825 1210 aaKnown RBP15.45■□□□□ 0.06
USP28-214ENST00000545540 IFRD2Q12894 506 aaPredicted RBP15.45■□□□□ 0.06
USP28-214ENST00000545540 ZNF460Q14592 562 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 GRIK4Q16099 956 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 PPM1LQ5SGD2 360 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 ATP2A3Q93084 1043 aa15.45■□□□□ 0.06
USP28-214ENST00000545540 DCPSQ96C86 337 aaKnown RBP15.45■□□□□ 0.06
USP28-214ENST00000545540 GCATO75600 419 aa15.44■□□□□ 0.06
USP28-214ENST00000545540 IDH3AP50213 366 aa15.44■□□□□ 0.06
USP28-214ENST00000545540 FRMD7Q6ZUT3 714 aa15.44■□□□□ 0.06
USP28-214ENST00000545540 DCLK2Q8N568 766 aa15.44■□□□□ 0.06
USP28-214ENST00000545540 SNX31Q8N9S9 440 aa15.44■□□□□ 0.06
USP28-214ENST00000545540 TMEM40Q8WWA1 233 aa15.44■□□□□ 0.06
USP28-214ENST00000545540 ZFP42Q96MM3 310 aa15.44■□□□□ 0.06
USP28-214ENST00000545540 KCNK16Q96T55 309 aa15.44■□□□□ 0.06
USP28-214ENST00000545540 C16orf70Q9BSU1 422 aa15.44■□□□□ 0.06
USP28-214ENST00000545540 CHRAC1Q9NRG0 131 aa15.44■□□□□ 0.06
USP28-214ENST00000545540 NDE1Q9NXR1 346 aa15.44■□□□□ 0.06
USP28-214ENST00000545540 LRCH1Q9Y2L9 728 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms