RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 SIM1P81133 766 aaPredicted RBP13.62□□□□□ -0.23
RTN3-213ENST00000543552 DCAF12L1Q5VU92 463 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 RFWD3Q6PCD5 774 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 IL27RAQ6UWB1 636 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 GBP6Q6ZN66 633 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 CACUL1Q86Y37 369 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 SCUBE3Q8IX30 993 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 ZCCHC9Q8N567 271 aaKnown RBP13.62□□□□□ -0.23
RTN3-213ENST00000543552 CYB5D2Q8WUJ1 264 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 NOX5Q96PH1 765 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 ADAM33Q9BZ11 813 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 MIR1-1HGQ9H1L0 117 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 POPDC2Q9HBU9 364 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 FSCN3Q9NQT6 498 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 KIAA1468Q9P260 1216 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 TJP2Q9UDY2 1190 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 SLC12A6Q9UHW9 1150 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 GTPBP10A4D1E9 387 aaKnown RBP13.61□□□□□ -0.23
RTN3-213ENST00000543552 TMEM8BA6NDV4 472 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 KCNJ18B7U540 433 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 BCAT2O15382 392 aaPredicted RBP13.61□□□□□ -0.23
RTN3-213ENST00000543552 RNASEH1O60930 286 aaKnown RBP13.61□□□□□ -0.23
RTN3-213ENST00000543552 GADD45BO75293 160 aaPredicted RBP13.61□□□□□ -0.23
RTN3-213ENST00000543552 GABBR2O75899 941 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 MOCS3O95396 460 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 CER1O95813 267 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 PROS1P07225 676 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 C7P10643 843 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 HLA-EP13747 358 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 SLC6A4P31645 630 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 SNX16P57768 344 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 GRIK2Q13002 908 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 MTA1Q13330 715 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 ZNF776Q68DI1 518 aaPredicted RBP13.61□□□□□ -0.23
RTN3-213ENST00000543552 TRIM65Q6PJ69 517 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 UNQ6494/PRO21346Q6UXR6 183 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 KDM1BQ8NB78 822 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 FIBINQ8TAL6 211 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 FCRL2Q96LA5 508 aaPredicted RBP13.61□□□□□ -0.23
RTN3-213ENST00000543552 SLC4A5Q9BY07 1137 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 THAP9Q9H5L6 903 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 STIM2Q9P246 746 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 APEX2Q9UBZ4 518 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 SCML1Q9UN30 329 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 PCDHB9Q9Y5E1 797 aa13.61□□□□□ -0.23
RTN3-213ENST00000543552 MUC22E2RYF6 1773 aaPredicted RBP13.6□□□□□ -0.23
RTN3-213ENST00000543552 MOCS2O96007 188 aaPredicted RBP13.6□□□□□ -0.23
RTN3-213ENST00000543552 CALCAP01258 141 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 SLC2A3P11169 496 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 PRKCSHP14314 528 aaPredicted RBP13.6□□□□□ -0.23
RTN3-213ENST00000543552 MAOBP27338 520 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 CD70P32970 193 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 USP8P40818 1118 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 SGSHP51688 502 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 AFF3P51826 1226 aaKnown RBP13.6□□□□□ -0.23
RTN3-213ENST00000543552 YWHAZP63104 245 aaKnown RBP13.6□□□□□ -0.23
RTN3-213ENST00000543552 PDCLQ13371 301 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 TEAD4Q15561 434 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 PTPRNQ16849 979 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 TPD52L1Q16890 204 aaPredicted RBP13.6□□□□□ -0.23
RTN3-213ENST00000543552 EXOC3L4Q17RC7 722 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 ZNF423Q2M1K9 1284 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 MS4A13Q5J8X5 152 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 TTC39BQ5VTQ0 682 aaPredicted RBP13.6□□□□□ -0.23
RTN3-213ENST00000543552 RNF219Q5W0B1 726 aaPredicted RBP13.6□□□□□ -0.23
RTN3-213ENST00000543552 DENND1BQ6P3S1 775 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 TMEM110Q86TL2 294 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 TAC4Q86UU9 113 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 FAM124AQ86V42 546 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 CREBRFQ8IUR6 639 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 FAM114A1Q8IWE2 563 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 CARNMT1Q8N4J0 409 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 MLKLQ8NB16 471 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 ZNF606Q8WXB4 792 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 SNX19Q92543 992 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 TTC17Q96AE7 1141 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 SLC39A13Q96H72 371 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 BTN2A3PQ96KV6 586 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 PRICKLE1Q96MT3 831 aaPredicted RBP13.6□□□□□ -0.23
RTN3-213ENST00000543552 BTBD1Q9H0C5 482 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 SGK2Q9HBY8 427 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 NAALADL1Q9UQQ1 740 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 NCKAP1Q9Y2A7 1128 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 NEUROG3Q9Y4Z2 214 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 CEP83Q9Y592 693 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 ZFHX4Q86UP3 3567 aa13.6□□□□□ -0.23
RTN3-213ENST00000543552 ADAMTS9Q9P2N4 1935 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 GOLGA6L7A0A1B0GV03 622 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 SPAARA0A1B0GVQ0 90 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 E5RJQ4 531 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 SEMA4FO95754 770 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 FYNP06241 537 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 GLI1P08151 1106 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 ZNF883P0CG24 379 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 CD59P13987 128 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 CSKP41240 450 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 MATKP42679 507 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 MTIF2P46199 727 aaKnown RBP13.59□□□□□ -0.23
RTN3-213ENST00000543552 RPS14P62263 151 aaKnown RBP13.59□□□□□ -0.23
RTN3-213ENST00000543552 RPS24P62847 133 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms