RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-216	ENST00000538235	BTN2A3P	Q96KV6	586 aa		13.55	□□□□□ -0.24
CHFR-216	ENST00000538235	DESI2	Q9BSY9	194 aa		13.55	□□□□□ -0.24
CHFR-216	ENST00000538235	CNPY3	Q9BT09	278 aa		13.55	□□□□□ -0.24
CHFR-216	ENST00000538235	PARVA	Q9NVD7	372 aa		13.55	□□□□□ -0.24
CHFR-216	ENST00000538235	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
CHFR-216	ENST00000538235	RRN3	Q9NYV6	651 aa		13.55	□□□□□ -0.24
CHFR-216	ENST00000538235	RAPGEFL1	Q9UHV5	662 aa		13.55	□□□□□ -0.24
CHFR-216	ENST00000538235	INTS6	Q9UL03	887 aa	Known RBP	13.55	□□□□□ -0.24
CHFR-216	ENST00000538235	VANGL2	Q9ULK5	521 aa		13.55	□□□□□ -0.24
CHFR-216	ENST00000538235	SHROOM3	Q8TF72	1996 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	GOLGA6L3	A6NEY3	463 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	TBL1X	O60907	577 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	TMEM253	P0C7T8	217 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	PSMA2	P25787	234 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	CD70	P32970	193 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	CCZ1B	P86790	482 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	CCZ1	P86791	482 aa	Predicted RBP	13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	SEMA3B	Q13214	749 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	C5orf22	Q49AR2	442 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	TMEM31	Q5JXX7	168 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	BRMS1L	Q5PSV4	323 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	CXorf57	Q6NSI4	855 aa	Known RBP	13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	DCUN1D2	Q6PH85	259 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	ZNF852	Q6ZMS4	543 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	UNC45B	Q8IWX7	931 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	MAML2	Q8IZL2	1156 aa	Predicted RBP	13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	TERB1	Q8NA31	727 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	ZNF564	Q8TBZ8	553 aa	Predicted RBP	13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	FNIP1	Q8TF40	1166 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	CCDC42	Q96M95	316 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	ACOX2	Q99424	681 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	SIK2	Q9H0K1	926 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	GOLPH3	Q9H4A6	298 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	DEF6	Q9H4E7	631 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	NDFIP2	Q9NV92	336 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	DNAJC17	Q9NVM6	304 aa	Known RBP	13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	STIM2	Q9P246	746 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	IMPACT	Q9P2X3	320 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	ANAPC7	Q9UJX3	599 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	ZNF510	Q9Y2H8	683 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	MUC6	Q6W4X9	2439 aa		13.54	□□□□□ -0.24
CHFR-216	ENST00000538235	PLXND1	Q9Y4D7	1925 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	IGLV3-10	A0A075B6K4	115 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	RNF40	O75150	1001 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	KAT7	O95251	611 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	NDUFA10	O95299	355 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	H2AFZ	P0C0S5	128 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	MYBL1	P10243	752 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	MIP	P30301	263 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	ADRA1B	P35368	520 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	KIR2DL1	P43626	348 aa	Predicted RBP	13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	SLC11A2	P49281	568 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	TAS2R40	P59535	323 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	SLC25A11	Q02978	314 aa	Known RBP	13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	FUT11	Q495W5	492 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	H2AFV	Q71UI9	128 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	VPS36	Q86VN1	386 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	ATP6V0D2	Q8N8Y2	350 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	SORCS1	Q8WY21	1168 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	NTAN1	Q96AB6	310 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	SNRNP25	Q9BV90	132 aa	Known RBP	13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	LACRT	Q9GZZ8	138 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	CHRD	Q9H2X0	955 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	MFSD1	Q9H3U5	465 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	WDCP	Q9H6R7	721 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	LMAN1L	Q9HAT1	526 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	ZNHIT6	Q9NWK9	470 aa	Known RBP	13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	MPP6	Q9NZW5	540 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	TRIM10	Q9UDY6	481 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	FZD10	Q9ULW2	581 aa		13.53	□□□□□ -0.24
CHFR-216	ENST00000538235	USP34	Q70CQ2	3546 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	EIF3CL	B5ME19	914 aa	Known RBP	13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	AVPR2	P30518	371 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	GBP1	P32455	592 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	CHKA	P35790	457 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	EIF2D	P41214	584 aa	Known RBP	13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	SEC13	P55735	322 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	SCAP	Q12770	1279 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	LMAN2	Q12907	356 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	MTAP	Q13126	283 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	MPPE1	Q53F39	396 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	EGFLAM	Q63HQ2	1017 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	PPP1R2P3	Q6NXS1	205 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	ADIPOR2	Q86V24	386 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	CCAR2	Q8N163	923 aa	Known RBP	13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	NIPA2	Q8N8Q9	360 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	HJURP	Q8NCD3	748 aa	Predicted RBP	13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	DDI1	Q8WTU0	396 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	RNF34	Q969K3	372 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	TRIM11	Q96F44	468 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	MSANTD3	Q96H12	275 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	KCTD15	Q96SI1	283 aa	Predicted RBP	13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	PNKP	Q96T60	521 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	EIF3C	Q99613	913 aa	Known RBP	13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	BAG1	Q99933	345 aa	Predicted RBP	13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	KCNF1	Q9H3M0	494 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	CD248	Q9HCU0	757 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	ARHGEF4	Q9NR80	690 aa		13.52	□□□□□ -0.25
CHFR-216	ENST00000538235	PCSK1N	Q9UHG2	260 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms