RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 CDC23Q9UJX2 597 aa9.13□□□□□ -0.95
VCAN-208ENST00000512590 A0A087WWV3 80 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 POTEMA6NI47 508 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 POTECB2RU33 542 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 FCHO1O14526 889 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 CA12O43570 354 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 EXTL3O43909 919 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 ASGR1P07306 291 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 ENO3P13929 434 aaPredicted RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 HSD3B1P14060 373 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 JUPP14923 745 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 ANPEPP15144 967 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 ZNF7P17097 686 aaPredicted RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 GJA8P48165 433 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 ARFIP2P53365 341 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 MCCD1P59942 119 aaPredicted RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 GPAT3Q53EU6 434 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 C2CD6Q53TS8 623 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 FGD3Q5JSP0 725 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 WDR45BQ5MNZ6 344 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 SLC2A7Q6PXP3 512 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 ZNF579Q8NAF0 562 aaKnown RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 XPO4Q9C0E2 1151 aaKnown RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 FANCLQ9NW38 375 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 SATB2Q9UPW6 733 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 LYVE1Q9Y5Y7 322 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 PDS5AQ29RF7 1337 aaKnown RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 ABHD14A-ACY1A0A1B0GW23 586 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 TLX3O43711 291 aaPredicted RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 NFATC1O95644 943 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 PIM1P11309 404 aaPredicted RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 TPP2P29144 1249 aaPredicted RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 OR1E1P30953 314 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 C2orf54Q08AI8 447 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 SLC39A12Q504Y0 691 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 ARMC12Q5T9G4 340 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 ZNF746Q6NUN9 644 aaPredicted RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 NFRKBQ6P4R8 1299 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 OTOP2Q7RTS6 562 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 USP38Q8NB14 1042 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 UBE2E3Q969T4 207 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 TMEM47Q9BQJ4 181 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 MINPP1Q9UNW1 487 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 EMSYQ7Z589 1322 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 ANKARQ7Z5J8 1434 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 ARL5CA6NH57 179 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 TMEM114B3SHH9 223 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 CDC40O60508 579 aaKnown RBP eCLIP9.12□□□□□ -0.95
VCAN-208ENST00000512590 CCDC22O60826 627 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 TRIM3O75382 744 aaPredicted RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 USP17L7P0C7H9 530 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 HDCP19113 662 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 IL12BP29460 328 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 RESTQ13127 1097 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 ZNF846Q147U1 533 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 OLFML2AQ68BL7 652 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 C19orf18Q8NEA5 215 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 RP9Q8TA86 221 aaKnown RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 ALDH8A1Q9H2A2 487 aaPredicted RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 RIBC2Q9H4K1 309 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 SPATA2Q9UM82 520 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 ZNF780BQ9Y6R6 833 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 STX16-NPEPL1H3BU86 382 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 STX16O14662 325 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 KCNQ3O43525 872 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 RLN1P04808 185 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 MTHFD1P11586 935 aaKnown RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 FOSL2P15408 326 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 CCNE1P24864 410 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 CXCR5P32302 372 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 PEX19P40855 299 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 DUSP3P51452 185 aaPredicted RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 DNAL1Q4LDG9 190 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 KLHL12Q53G59 568 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 CNSTQ6PJW8 725 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 POTEGQ6S5H5 508 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 HOMEZQ8IX15 550 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 FSTL5Q8N475 847 aaPredicted RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 PROX1Q92786 737 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 TMEM121Q9BTD3 319 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 RSAD1Q9HA92 442 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 ENY2Q9NPA8 101 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 TNPO3Q9Y5L0 923 aaKnown RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 COL17A1Q9UMD9 1497 aaPredicted RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 A0A0B4J269 797 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 CCL16O15467 120 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 NQO1P15559 274 aaKnown RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 WARSP23381 471 aaKnown RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 AVPR1BP47901 424 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 CACNA2D1P54289 1103 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 ANKMY2Q8IV38 441 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 CATSPER1Q8NEC5 780 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 GAB3Q8WWW8 586 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 MCEEQ96PE7 176 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 SH3GL3Q99963 347 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.12□□□□□ -0.95
VCAN-208ENST00000512590 PABPC3Q9H361 631 aaKnown RBP9.12□□□□□ -0.95
VCAN-208ENST00000512590 CATSPERZQ9NTU4 200 aa9.12□□□□□ -0.95
VCAN-208ENST00000512590 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.12□□□□□ -0.952e-7■■■■■ 28.3
VCAN-208ENST00000512590 EDC4Q6P2E9 1401 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms