RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 RAB41Q5JT25 222 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 SPANXN3Q5MJ09 141 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 SYCP2LQ5T4T6 812 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 OTUD1Q5VV17 481 aaPredicted RBP12.33□□□□□ -0.44
NUP54-202ENST00000502850 ITPRIPL1Q6GPH6 555 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 KYAT3Q6YP21 454 aaKnown RBP12.33□□□□□ -0.44
NUP54-202ENST00000502850 PAQR9Q6ZVX9 377 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 PRPF39Q86UA1 669 aaKnown RBP12.33□□□□□ -0.44
NUP54-202ENST00000502850 SCML4Q8N228 414 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 SLC7A14Q8TBB6 771 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 LENG1Q96BZ8 264 aaPredicted RBP12.33□□□□□ -0.44
NUP54-202ENST00000502850 P2RY11Q96G91 374 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 VAT1Q99536 393 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 KLF6Q99612 283 aaPredicted RBP12.33□□□□□ -0.44
NUP54-202ENST00000502850 EPAS1Q99814 870 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 TMEM106CQ9BVX2 250 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 ADAM33Q9BZ11 813 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 ULBP1Q9BZM6 244 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 MOCS1Q9NZB8 636 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 LNPEPQ9UIQ6 1025 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 ST3GAL5Q9UNP4 418 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 DCLK1O15075 740 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 CREB3O43889 395 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 RFPL1O75677 317 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 LTFP02788 710 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 CSH1P0DML2 217 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 CSH2P0DML3 217 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 RARBP10826 455 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 SKIP12755 728 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 CCND1P24385 295 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 ACAT1P24752 427 aaKnown RBP12.32□□□□□ -0.44
NUP54-202ENST00000502850 DNAJB2P25686 324 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 CTGFP29279 349 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 ADRA1BP35368 520 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 ZNF33AQ06730 810 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 NME3Q13232 169 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 MAPRE1Q15691 268 aaKnown RBP12.32□□□□□ -0.44
NUP54-202ENST00000502850 CCL14Q16627 93 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 CASC4Q6P4E1 433 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 BEND5Q7L4P6 421 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 PYROXD2Q8N2H3 581 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 CCNYQ8ND76 341 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 ZNF333Q96JL9 665 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 UROC1Q96N76 676 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 SENP6Q9GZR1 1112 aaPredicted RBP12.32□□□□□ -0.44
NUP54-202ENST00000502850 UPF3AQ9H1J1 476 aaKnown RBP12.32□□□□□ -0.44
NUP54-202ENST00000502850 TXNDC16Q9P2K2 825 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 TRHDEQ9UKU6 1024 aa12.32□□□□□ -0.44
NUP54-202ENST00000502850 COL4A4P53420 1690 aaPredicted RBP12.32□□□□□ -0.44
NUP54-202ENST00000502850 PATJQ8NI35 1801 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 CLDN5O00501 218 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 PSMD3O43242 534 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 GLRA3O75311 464 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 HAUS5O94927 633 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 POLBP06746 335 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 KRT16P08779 473 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 HTR7P34969 479 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 COG7P83436 770 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 PPIDQ08752 370 aaKnown RBP12.31□□□□□ -0.44
NUP54-202ENST00000502850 SEMA3BQ13214 749 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 PREPLQ4J6C6 727 aaPredicted RBP12.31□□□□□ -0.44
NUP54-202ENST00000502850 MFSD14CQ5VZR4 134 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 FAM91A1Q658Y4 838 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 MRPL10Q7Z7H8 261 aaKnown RBP12.31□□□□□ -0.44
NUP54-202ENST00000502850 ANKLE1Q8NAG6 615 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 E2F7Q96AV8 911 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 PGBD4Q96DM1 585 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 PCED1BQ96HM7 432 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 ZFP42Q96MM3 310 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 PPP1R2P1Q96PQ5 205 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 LGMNQ99538 433 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 PRDM12Q9H4Q4 367 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 FAM96AQ9H5X1 160 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 PLAC1Q9HBJ0 212 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 CRTAC1Q9NQ79 661 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 PIGVQ9NUD9 493 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 RNF19AQ9NV58 838 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 KCNK4Q9NYG8 393 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 SIRPGQ9P1W8 387 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 KLHL8Q9P2G9 620 aaPredicted RBP12.31□□□□□ -0.44
NUP54-202ENST00000502850 SRRDQ9UH36 339 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 FBXW11Q9UKB1 542 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 ADAM28Q9UKQ2 775 aa12.31□□□□□ -0.44
NUP54-202ENST00000502850 SYNJ2BP-COX16A0A087WUM0 186 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 CXorf49A8MYA2 514 aaPredicted RBP12.3□□□□□ -0.44
NUP54-202ENST00000502850 ZNF623O75123 536 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 PIAS1O75925 651 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 NCAM1P13591 858 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 BGNP21810 368 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 PTPN4P29074 926 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 NKX3-2P78367 333 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 ZBTB16Q05516 673 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 NIPAL4Q0D2K0 466 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 CRYMQ14894 314 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 KRT72Q14CN4 511 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 INSCQ1MX18 579 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 TAF1BQ53T94 588 aaPredicted RBP12.3□□□□□ -0.44
NUP54-202ENST00000502850 GNASQ5JWF2 1037 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 WLSQ5T9L3 541 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 CLNKQ7Z7G1 428 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms