RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 AHI1Q8N157 1196 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 RBBP8NLQ8NC74 664 aaPredicted RBP8.43□□□□□ -1.06
USP54-211ENST00000474929 APOBEC4Q8WW27 367 aaKnown RBP8.43□□□□□ -1.06
USP54-211ENST00000474929 WASF1Q92558 559 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 HAPLN3Q96S86 360 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 HAPLN2Q9GZV7 340 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 FBXO44Q9H4M3 255 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 EBF2Q9HAK2 575 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 PRSS16Q9NQE7 514 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 PLK2Q9NYY3 685 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 SALL4Q9UJQ4 1053 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 ENTPD4Q9Y227 616 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 CSNK1G3Q9Y6M4 447 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 ANKHD1Q8IWZ3 2542 aaKnown RBP8.43□□□□□ -1.06
USP54-211ENST00000474929 CCDC168Q8NDH2 2452 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 APCP25054 2843 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 LY6G6EA0A0G2JKS1 128 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 A0A1W2PP55 124 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 FAM92AA1XBS5 289 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 CPED1A4D0V7 1026 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 K7ESM1 405 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 SLC7A4O43246 635 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 ADH1BP00325 375 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 ITGB3P05106 788 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 DLDP09622 509 aaKnown RBP8.42□□□□□ -1.06
USP54-211ENST00000474929 PRR29P0C7W0 189 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 PDIA3P30101 505 aaKnown RBP8.42□□□□□ -1.06
USP54-211ENST00000474929 CCKBRP32239 447 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 PLA2G4AP47712 749 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 FXR2P51116 673 aaKnown RBP eCLIP8.42□□□□□ -1.06
USP54-211ENST00000474929 COPB1P53618 953 aaKnown RBP8.42□□□□□ -1.06
USP54-211ENST00000474929 ADPRHP54922 357 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 MLLT10P55197 1068 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 EVCP57679 992 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 ST8SIA6P61647 398 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 PSMC1P62191 440 aaKnown RBP8.42□□□□□ -1.06
USP54-211ENST00000474929 CCT2P78371 535 aaKnown RBP8.42□□□□□ -1.06
USP54-211ENST00000474929 MAPK7Q13164 816 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 SRSF6Q13247 344 aaKnown RBP8.42□□□□□ -1.06
USP54-211ENST00000474929 KCNJ12Q14500 433 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 CST6Q15828 149 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 HS2ST1Q7LGA3 356 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 DCP2Q8IU60 420 aaKnown RBP8.42□□□□□ -1.06
USP54-211ENST00000474929 KCTD17Q8N5Z5 321 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 TTC13Q8NBP0 860 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 OR6B3Q8NGW1 331 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 ABHD17AQ96GS6 310 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 CDK5RAP1Q96SZ6 601 aaKnown RBP8.42□□□□□ -1.06
USP54-211ENST00000474929 ESYT1Q9BSJ8 1104 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 EFHD1Q9BUP0 239 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 KLF16Q9BXK1 252 aaPredicted RBP8.42□□□□□ -1.06
USP54-211ENST00000474929 NCOA5Q9HCD5 579 aaKnown RBP8.42□□□□□ -1.06
USP54-211ENST00000474929 CASS4Q9NQ75 786 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 UCKL1Q9NWZ5 548 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 AGAP1Q9UPQ3 857 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 U3KQA8 63 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 MYH11P35749 1972 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 HIVEP3Q5T1R4 2406 aa8.42□□□□□ -1.06
USP54-211ENST00000474929 PCSK5Q92824 1860 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 MKRN2OSH3BPM6 223 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 TPP1O14773 563 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 FAM155BO75949 473 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 LDLRP01130 860 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 CENPBP07199 599 aaPredicted RBP8.41□□□□□ -1.06
USP54-211ENST00000474929 GIMD1P0DJR0 217 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 GOT1P17174 413 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 C5AR1P21730 350 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 WARSP23381 471 aaKnown RBP8.41□□□□□ -1.06
USP54-211ENST00000474929 PDX1P52945 283 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 SLC5A3P53794 718 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 NCKAP1LP55160 1127 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 RBP5P82980 135 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 ECM1Q16610 540 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 CDKN3Q16667 212 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 CCDC142Q17RM4 750 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 ADCK5Q3MIX3 580 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 MDH1BQ5I0G3 518 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 TCTN3Q6NUS6 607 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 GUSBP11Q6P575 273 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 SPNS3Q6ZMD2 512 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 OSTM1Q86WC4 334 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 TRIM69Q86WT6 500 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 CPXM2Q8N436 756 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 KDM1BQ8NB78 822 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 OR14C36Q8NHC7 312 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 CPT1CQ8TCG5 803 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 SORCS1Q8WY21 1168 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 C5orf34Q96MH7 638 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 CDH19Q9H159 772 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 NEUROG2Q9H2A3 272 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 SYNDIG1Q9H7V2 258 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 POLD4Q9HCU8 107 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 DMAP1Q9NPF5 467 aaPredicted RBP8.41□□□□□ -1.06
USP54-211ENST00000474929 CRTAC1Q9NQ79 661 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 DDX19AQ9NUU7 478 aaKnown RBP8.41□□□□□ -1.06
USP54-211ENST00000474929 AKAP7Q9P0M2 348 aaPredicted RBP8.41□□□□□ -1.06
USP54-211ENST00000474929 PISDQ9UG56 409 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 KIAA1024Q9UPX6 916 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 KIF26BQ2KJY2 2108 aa8.41□□□□□ -1.06
USP54-211ENST00000474929 TBC1D3DA0A087WVF3 549 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms