RNA–Protein interactions for RNA: ENST00000474246.1

SMARCE1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-208ENST00000474246 ATG16L2Q8NAA4 619 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 PIK3C3Q8NEB9 887 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 TRPV1Q8NER1 839 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 RAET1EQ8TD07 263 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 GATAD2BQ8WXI9 593 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 RFKQ969G6 155 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 CCDC74AQ96AQ1 378 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 AHCYL2Q96HN2 611 aaKnown RBP6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 PGBD1Q96JS3 809 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 ZNF560Q96MR9 790 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 GORASP1Q9BQQ3 440 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 THUMPD3Q9BV44 507 aaKnown RBP6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 PITHD1Q9GZP4 211 aaPredicted RBP6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 RHBGQ9H310 441 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 WDR26Q9H7D7 661 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 SENP1Q9P0U3 644 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 SLC8A2Q9UPR5 921 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 USP20Q9Y2K6 914 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 PCDHGA9Q9Y5G4 932 aaKnown RBP6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 PCDHGA8Q9Y5G5 932 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 PCDHGA7Q9Y5G6 932 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 PCDHGA6Q9Y5G7 932 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 PCDHGA3Q9Y5H0 932 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 CYP46A1Q9Y6A2 500 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 ALPK3Q96L96 1907 aa6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 COL1A1P02452 1464 aaPredicted RBP6.29□□□□□ -1.4
SMARCE1-208ENST00000474246 COL4A6Q14031 1691 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 LRRC37A2A6NM11 1700 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 ANKRD26Q9UPS8 1709 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 USP24Q9UPU5 2620 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 HTR3EA5X5Y0 456 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 RHPN2P1A8MT19 583 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 GOLGA8RI6L899 631 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 AXIN1O15169 862 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 RAD51BO15315 384 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 CYP27B1O15528 508 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 CCNT1O60563 726 aaKnown RBP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 SCAF4O95104 1147 aaKnown RBP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 MLYCDO95822 493 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 PENKP01210 267 aaPredicted RBP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 TAGLN2P37802 199 aaKnown RBP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 LIG3P49916 1009 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 SERPINB8P50452 374 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 ITGA8P53708 1063 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 PRRX1P54821 245 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 ATP8B2P98198 1209 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 MAP3K10Q02779 954 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 CUL3Q13618 768 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 NONOQ15233 471 aaKnown RBP eCLIP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 SNAP47Q5SQN1 464 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 DLK2Q6UY11 383 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 MACC1Q6ZN28 852 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 TSPYL5Q86VY4 417 aaPredicted RBP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 LSRQ86X29 649 aaPredicted RBP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 KIAA2013Q8IYS2 634 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 MPP5Q8N3R9 675 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 IQUBQ8NA54 791 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 OR8K1Q8NGG5 319 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 EDEM1Q92611 657 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 ACSF2Q96CM8 615 aaPredicted RBP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 ITPKCQ96DU7 683 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 PDLIM5Q96HC4 596 aaKnown RBP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 CFAP57Q96MR6 1250 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 GBP5Q96PP8 586 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 PKP4Q99569 1192 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 CIB1Q99828 191 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 PUS3Q9BZE2 481 aaKnown RBP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 SHCBP1LQ9BZQ2 653 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 TRIM39Q9HCM9 518 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 CD320Q9NPF0 282 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 RAB6BQ9NRW1 208 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 LRFN1Q9P244 771 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 PADI4Q9UM07 663 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 KLHL20Q9Y2M5 609 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 SNX9Q9Y5X1 595 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 TTC26A0AVF1 554 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 ARHGEF37A1IGU5 675 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 GTPBP1O00178 669 aaKnown RBP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 DVL2O14641 736 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 HNRNPRO43390 633 aaKnown RBP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 CYTIPO60759 359 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 TUSC2O75896 110 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 RNF8O76064 485 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 CST3P01034 146 aaPredicted RBP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 LMNAP02545 664 aaKnown RBP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 PF4P02776 101 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 ASLP04424 464 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 GHRP10912 638 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 ACADMP11310 421 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 PRKACAP17612 351 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 TBXAS1P24557 533 aaPredicted RBP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 NFKBIAP25963 317 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 IL13P35225 146 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 PITPNBP48739 271 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 MFAP3P55082 362 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 RAC3P60763 192 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 MC1RQ01726 317 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 ITGB3BPQ13352 177 aaPredicted RBP6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 RAPSNQ13702 412 aa6.28□□□□□ -1.4
SMARCE1-208ENST00000474246 KCNC3Q14003 757 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms